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Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
CDK4 T172 phosphorylation is central in a CDK7-dependent bidirectional CDK4/CDK2 interplay mediated by p21
Xavier Bisteau1, Sabine Paternot, Bianca Colleoni
1WELBIO and Institute of Interdisciplinary Research (IRIBHM), Université Libre de Bruxelles, Brussels, Belgium.
Abstract:
Cell cycle progression, including genome duplication, is orchestrated by cyclin-dependent kinases (CDKs). CDK activation depends on phosphorylation of their T-loop by a CDK-activating kinase (CAK). In animals, the only known CAK for CDK2 and CDK1 is cyclin H-CDK7, which is constitutively active. Therefore, the critical activation step is dephosphorylation of inhibitory sites by Cdc25 phosphatases rather than unrestricted T-loop phosphorylation. Homologous CDK4 and CDK6 bound to cyclins D are master integrators of mitogenic/oncogenic signaling cascades by initiating the inactivation of the central oncosuppressor pRb and cell cycle commitment at the restriction point. Unlike the situation in CDK1 and CDK2 cyclin complexes, and in contrast to the weak but constitutive T177 phosphorylation of CDK6, we have identified the T-loop phosphorylation at T172 as the highly regulated step determining CDK4 activity. Whether both CDK4 and CDK6 phosphorylations are catalyzed by CDK7 remains unclear. To answer this question, we took a chemical-genetics approach by using analogue-sensitive CDK7(as/as) mutant HCT116 cells, in which CDK7 can be specifically inhibited by bulky adenine analogs. Intriguingly, CDK7 inhibition prevented activating phosphorylations of CDK4/6, but for CDK4 this was at least partly dependent on its binding to p21 (cip1) . In response to CDK7 inhibition, p21-binding to CDK4 increased concomitantly with disappearance of the most abundant phosphorylation of p21, which we localized at S130 and found to be catalyzed by both CDK4 and CDK2. The S130A mutation of p21 prevented the activating CDK4 phosphorylation, and inhibition of CDK4/6 and CDK2 impaired phosphorylations of both p21 and p21-bound CDK4. Therefore, specific CDK7 inhibition revealed the following: a crucial but partly indirect CDK7 involvement in phosphorylation/activation of CDK4 and CDK6; existence of CDK4-activating kinase(s) other than CDK7; and novel CDK7-dependent positive feedbacks mediated by p21 phosphorylation by CDK4 and CDK2 to sustain CDK4 activation, pRb inactivation, and restriction point passage.
Insights
Cyclin-dependent kinase 7 (CDK7) plays a crucial role in CDK4/6 activation, with p21 phosphorylation mediating positive feedback loops essential for cell cycle progression and restriction point passage.
Area of Science:
- Cell Biology
- Molecular Biology
- Cancer Research
Background:
- Cell cycle progression is regulated by cyclin-dependent kinases (CDKs), with activation dependent on T-loop phosphorylation by CDK-activating kinase (CAK).
- CDK4/6-cyclin D complexes integrate mitogenic signals, inactivate pRb, and drive cell cycle commitment. T-loop phosphorylation at T172 is critical for CDK4 activity.
- The specific CAK responsible for CDK4/6 T-loop phosphorylation and its regulation remain incompletely understood.
Purpose of the Study:
- To investigate the role of CDK7 in the phosphorylation and activation of CDK4 and CDK6.
- To elucidate the regulatory mechanisms governing CDK4/6 activation, including the involvement of p21.
- To identify potential alternative CDK4-activating kinases and feedback mechanisms.
Main Methods:
- Utilized analogue-sensitive CDK7(as/as) mutant HCT116 cells for chemical-genetic inhibition of CDK7.
- Assessed the impact of CDK7 inhibition on CDK4/6 T-loop phosphorylation and p21 phosphorylation.
- Employed site-directed mutagenesis (p21 S130A) to probe the function of p21 phosphorylation.
Main Results:
- Specific CDK7 inhibition impaired activating phosphorylations of CDK4/6, with CDK4 activation showing partial dependence on p21 binding.
- CDK7 inhibition increased p21 binding to CDK4 and decreased p21 phosphorylation at S130, which is catalyzed by CDK4/2.
- The p21 S130A mutation blocked activating CDK4 phosphorylation, and inhibition of CDK4/6/2 impaired p21 and p21-bound CDK4 phosphorylation.
Conclusions:
- CDK7 is crucial, though partly indirectly, for CDK4/6 phosphorylation and activation, suggesting the existence of other CDK4-activating kinases.
- Novel CDK7-dependent positive feedback loops involving p21 phosphorylation by CDK4/2 are identified, sustaining CDK4 activation.
- These findings highlight complex regulatory networks involving CDK7, p21, and CDK4/6 in controlling cell cycle progression and pRb inactivation.
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