Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

C4 Pathway and CAM01:27

C4 Pathway and CAM

Most plants use the C3 pathway for carbon fixation. However, some plants, such as sugar cane, corn, and cacti that grow in hot conditions, use alternative pathways to fix carbon and conserve energy loss due to photorespiration. Photorespiration is the process that occurs when the oxygen concentration is high. Under such conditions, the rubisco enzyme in the Calvin cycle binds O2 instead of CO2, which halts photosynthesis and consumes energy.
C4 Pathway
The C4 pathway is used by plants such as...
Biostatistics: Overview01:20

Biostatistics: Overview

Biostatistics plays a crucial role in understanding and analyzing data in healthcare and biology. Biostatisticians conduct experiments, gather evidence, and draw meaningful conclusions using statistical methods and techniques. Different variables form the foundation of biostatistical analysis, allowing researchers to understand and interpret data effectively. These variables are classified into different types, each serving a specific purpose in statistical analysis.
Discrete variables are...
Interpreting R Charts01:22

Interpreting R Charts

R chart, or range chart, is a fundamental tool in statistical process control used to monitor the variability within a process. It complements the X-bar (x̄) chart by focusing on the range of the data, rather than individual values, providing a clear picture of the process dispersion over time.
An R chart plots the range of subsets of measurements collected from a process. Each point on the chart represents the range—defined as the difference between the maximum and minimum values—of a sample...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Risk prediction models based on machine learning for emergence delirium in elderly patients undergoing spine surgery: development and validation study.

BMC anesthesiology·2026
Same author

Vegetation sensitivity to drought depends on bedrock type in a subtropical karst landscape in Southwest China.

Plant diversity·2026
Same author

Radon-222 in karst caves of Southwestern China: Sources, seasonal dynamics, and human exposure risks.

Ecotoxicology and environmental safety·2026
Same author

Event-based diagnosis of flow connectivity and hydrogeochemical resilience in a mining-impacted karst aquifer.

Water research·2026
Same author

Phenome-derived polygenic scores and social determinants jointly shape context-dependent disease risk.

medRxiv : the preprint server for health sciences·2026
Same author

Efficacy of preventive interventions for postoperative delirium in elderly patients undergoing spinal surgery: A network meta-analysis of randomized controlled trials.

Journal of clinical anesthesia·2026
Same journal

Probabilistic RNA designability via interpretable ensemble approximation and dynamic decomposition.

Bioinformatics (Oxford, England)·2026
Same journal

Quantifying domain-specific relevance of computational biology Wikipedia articles using TF-IDF and cosine similarity.

Bioinformatics (Oxford, England)·2026
Same journal

GATSBI: improving context-aware protein embeddings through biologically motivated data splits.

Bioinformatics (Oxford, England)·2026
Same journal

BiMba: using Vision Mamba to predict protein sites that bind other proteins.

Bioinformatics (Oxford, England)·2026
Same journal

ProMeta: a meta-learning framework for robust disease diagnosis and prediction from plasma proteomics.

Bioinformatics (Oxford, England)·2026
Same journal

Is a Win-Win possible? Achieving pareto-optimal privacy-utility balance in fine-tuned genome language model embeddings against embedding reconstruction attacks.

Bioinformatics (Oxford, England)·2026
See all related articles

Related Experiment Video

Updated: May 10, 2026

A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information
05:01

A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information

Published on: July 1, 2020

Pathview: an R/Bioconductor package for pathway-based data integration and visualization.

Weijun Luo1, Cory Brouwer

  • 1Department of Bioinformatics and Genomics, UNC Charlotte, Charlotte, NC 28223, USA. luo_weijun@yahoo.com

Bioinformatics (Oxford, England)
|June 7, 2013
PubMed
Summary
This summary is machine-generated.

Pathview is a new software tool for integrating and visualizing biological pathway data. It maps user data onto pathway graphs, simplifying complex biological pathway analysis.

More Related Videos

A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

Related Experiment Videos

Last Updated: May 10, 2026

A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information
05:01

A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information

Published on: July 1, 2020

A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Systems Biology

Background:

  • Biological pathway analysis is crucial for understanding complex biological systems.
  • Integrating and visualizing diverse datasets onto pathways remains a challenge.

Purpose of the Study:

  • To introduce Pathview, a novel toolset for pathway-based data integration and visualization.
  • To provide a user-friendly method for mapping and rendering biological data onto pathway graphs.

Main Methods:

  • Pathview automatically downloads pathway graph data.
  • It parses user-supplied data files.
  • User data is mapped and integrated onto the pathway graphs for visualization.

Main Results:

  • Pathview enables seamless integration of user data with pathway information.
  • The tool generates pathway graphs with mapped data for intuitive interpretation.
  • It functions as a stand-alone program but can integrate with other analysis tools.

Conclusions:

  • Pathview offers a powerful and novel approach to pathway-based data analysis.
  • The tool simplifies the process of data integration and visualization for biological pathways.
  • It has the potential to enhance large-scale automated analysis pipelines.