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Updated: May 10, 2026

Using Human Differentially Expressed Gene Lists to Perform Downstream Pathway Enrichment Analysis and Target Prioritization
Published on: October 3, 2025
From integrative genomics to therapeutic targets.
Rachael Natrajan1, Paul Wilkerson
1Breakthrough Breast Cancer Research Centre, The Institute of Cancer Research, London, United Kingdom. rachael.natrajan@icr.ac.uk
Integrating pathology, genomic, and functional genomics reveals breast cancer subtypes and genetic drivers. This knowledge aids in developing targeted therapies for improved patient outcomes.
Area of Science:
- Oncology
- Genomics
- Molecular Biology
Background:
- Breast cancer research increasingly integrates pathology with genomic and functional genomics.
- Understanding the genetic basis of breast cancer subtypes is crucial for targeted therapy development.
Purpose of the Study:
- To explore how combinatorial approaches enhance the understanding of breast cancer's genetic underpinnings.
- To identify key genotypic-phenotypic correlations and genetic dependencies in breast cancer subtypes.
- To discuss the application of this knowledge in defining novel, tailored therapies for cancer patients.
Main Methods:
- Utilizing combinatorial approaches integrating conventional pathology with genomic and functional genomics.
- Characterizing the mutational repertoire of breast cancers using next-generation sequencing.
- Focusing on homogeneous subgroups and integrating orthogonal data types with functional approaches.
Main Results:
- Identification of key genotypic-phenotypic correlations in various breast cancer subtypes.
- Discovery of specific genetic dependencies driving tumor behavior.
- Application of genomic insights to define novel, tailored therapeutic strategies.
Conclusions:
- Combinatorial approaches are vital for unraveling breast cancer heterogeneity.
- Identifying driver events requires integrating diverse data types and functional studies.
- Targeting specific genetic aberrations offers a path toward more effective breast cancer treatments.
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