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Updated: May 10, 2026

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Published on: October 19, 2006
FOXO1 regulates expression of a microRNA cluster on X chromosome
Ruchi Singhal1, Jonathan E Bard, Norma J Nowak
1Department of Cell Stress Biology, Roswell Park Cancer Institute, BLSC L3-318, Buffalo, NY 14263, USA.
Abstract:
Phosphoinositol-3-kinase (PI3K) pathway is a crucial modulator of many physiological and pathophysiological phenomena, including aging, diabetes and cancer. Protein kinase Akt, a downstream effector of PI3K, controls a plethora of cellular functions, including gene transcription. A key mechanism connecting Akt activity to changes in gene expression is inhibitory phosphorylation of FOXO family of transcription factors. Accordingly, altered expression of FOXO targets may account for many biological consequences of PI3K/Akt signaling. While the previous efforts focused on FOXO-dependent regulation of protein-coding genes, non-coding RNA genes have emerged as equally important targets of many transcription factors. Therefore, we utilized a regulated form of FOXO1 to profile FOXO1-dependent changes in miRNA expression in human cells. Both microarray hybridization and next-generation sequencing revealed changes in the products of a miRNA cluster on X chromosome. Rapid induction of these miRNAs occurred independently of de novo protein synthesis. Furthermore, inhibition of PI3K in cancer cell lines caused derepression of these miRNAs, as would be expected for FOXO-regulated genes. Members of the major oncogenic cascades are significantly overrepresented among the predicted targets of the miRNAs, consistent with tumor-suppressive role of FOXO1. The discovered miRNAs represent new candidate mediators of FOXO1 functions and possible biomarkers of its activity.
Insights
The Phosphoinositol-3-kinase (PI3K)/Akt pathway regulates gene expression via FOXO1 transcription factors. This study identifies novel microRNAs (miRNAs) controlled by FOXO1, suggesting their role in cancer and as biomarkers.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- The Phosphoinositol-3-kinase (PI3K) pathway, including the protein kinase Akt, is vital in cellular functions and diseases like cancer and diabetes.
- Akt influences gene transcription partly through the inhibitory phosphorylation of FOXO transcription factors.
- While FOXO-regulated protein-coding genes are studied, non-coding RNA genes, like microRNAs (miRNAs), are increasingly recognized as important targets.
Purpose of the Study:
- To investigate FOXO1-dependent changes in miRNA expression in human cells.
- To identify novel miRNAs regulated by the PI3K/Akt/FOXO1 signaling axis.
- To explore the potential role of these miRNAs in cancer biology and as biomarkers.
Main Methods:
- Utilized a regulated form of FOXO1 to profile miRNA expression changes.
- Employed microarray hybridization and next-generation sequencing for comprehensive analysis.
- Investigated miRNA regulation in cancer cell lines upon PI3K inhibition.
Main Results:
- Identified significant changes in miRNA expression from a specific cluster on the X chromosome.
- Observed rapid induction of these miRNAs, independent of new protein synthesis.
- Demonstrated derepression of these miRNAs upon PI3K inhibition in cancer cells, consistent with FOXO1 regulation.
- Found overrepresentation of oncogenic cascade members among predicted miRNA targets, supporting a tumor-suppressive role for FOXO1.
Conclusions:
- Discovered novel miRNAs regulated by FOXO1, expanding the understanding of PI3K/Akt signaling.
- These miRNAs are potential mediators of FOXO1 functions and may serve as biomarkers for FOXO1 activity.
- The findings suggest a role for these miRNAs in tumor suppression and cancer development.
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