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Updated: May 10, 2026

VDJ-Seq: Deep Sequencing Analysis of Rearranged Immunoglobulin Heavy Chain Gene to Reveal Clonal Evolution Patterns of B Cell Lymphoma
Published on: December 28, 2015
Functional cloning of recurrence-specific antigens identifies molecular targets to treat tumor relapse
Nicolas Boisgerault1, Timothy Kottke, Jose Pulido
1Department of Molecular Medicine, Mayo Clinic, Rochester, Minnesota 55905, USA.
Abstract:
Aggressive regrowth of recurrent tumors following treatment-induced dormancy represents a major clinical challenge for treatment of malignant disease. We reported previously that recurrent prostate tumors, which underwent complete macroscopic regression followed by aggressive regrowth, could be cured with a vesicular stomatitis virus (VSV)-expressed cDNA library derived from recurrent tumor cells. By screening the protective, recurrence-derived VSV-cDNA library, here we identify topoisomerase-IIα (TOPO-IIα) as a recurrence-specific tumor antigen against which tolerance can be broken. Tumor recurrences, in two different types of tumor (prostate and melanoma), which had evaded two different frontline treatments (immunotherapy or chemotherapy), significantly overexpressed TOPO-IIα compared with their primary tumor counterparts, which conferred a novel sensitivity to doxorubicin (DOX) chemotherapy upon the recurrent tumors. This was exploited in vivo using combination therapies to cure mice, which would otherwise have relapsed, after suboptimal primary therapy in both models. Our data show that recurrent tumors-across histologies and primary treatments-express distinct antigens compared with the primary tumor which can be identified using the VSV-cDNA library technology. These results suggest that it may be possible to design a few common second-line therapies against a variety of tumor recurrences, in some cases using agents with no obvious activity against the primary tumor.
Insights
Recurrent tumors overexpress topoisomerase-IIα (TOPO-IIα), a target for novel therapies. This discovery enables new treatments for aggressive cancer regrowth after initial therapy, improving patient outcomes.
Area of Science:
- Oncology
- Immunology
- Molecular Biology
Background:
- Recurrent tumors pose a significant clinical challenge due to aggressive regrowth after treatment-induced dormancy.
- Identifying specific antigens on recurrent tumors is crucial for developing effective second-line therapies.
Purpose of the Study:
- To identify recurrence-specific tumor antigens using a vesicular stomatitis virus (VSV)-expressed cDNA library.
- To investigate the role of topoisomerase-IIα (TOPO-IIα) as a target antigen in recurrent prostate and melanoma tumors.
- To evaluate combination therapies for treating recurrent tumors resistant to frontline treatments.
Main Methods:
- Screening of a VSV-cDNA library derived from recurrent tumor cells.
- Comparative analysis of TOPO-IIα expression in primary versus recurrent tumors (prostate and melanoma).
- In vivo studies utilizing combination therapies (including doxorubicin) in mouse models.
Main Results:
- Topoisomerase-IIα (TOPO-IIα) was identified as a recurrence-specific tumor antigen.
- Recurrent tumors (prostate and melanoma) showed significantly higher TOPO-IIα expression compared to primary tumors.
- Recurrent tumors exhibited a novel sensitivity to doxorubicin (DOX) chemotherapy.
- Combination therapies successfully cured mice with recurrent tumors that would otherwise relapse.
Conclusions:
- Recurrent tumors express distinct antigens compared to primary tumors, identifiable via VSV-cDNA library technology.
- TOPO-IIα is a promising target for breaking tolerance in recurrent cancers.
- The findings suggest the potential for developing common second-line therapies against various tumor recurrences, potentially using agents with limited primary tumor activity.
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