Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

The Roles of Bacteria and Fungi in Plant Nutrition02:11

The Roles of Bacteria and Fungi in Plant Nutrition

Plants have the impressive ability to create their own food through photosynthesis. However, plants often require assistance from organisms in the soil to acquire the nutrients they need to function correctly. Both bacteria and fungi have evolved symbiotic relationships with plants that help the species to thrive in a wide variety of environments.
Microbe-Plant Interactions01:09

Microbe-Plant Interactions

Microbe-plant interactions represent a dynamic spectrum of associations shaped by intricate chemical signaling. These interactions can be neutral, beneficial, or detrimental, and profoundly influence plant physiology, growth, and ecosystem function. The plant microbiome, comprising bacteria, fungi, archaea, protists, and viruses, plays a pivotal role in mediating these effects through surface colonization, internal colonization, or systemic symbiosis.Mutualistic associations, particularly with...
Soil Microbial Ecology01:29

Soil Microbial Ecology

Soil microbial ecology is defined by highly diverse, spatially structured communities that drive nutrient cycling, organic matter turnover, and overall ecosystem stability. Although a gram of soil can contain thousands of bacterial and archaeal taxa, the ecological processes they mediate are even more crucial for sustaining terrestrial life.Microhabitats and NichesSoil is a heterogeneous mixture of minerals, organic matter, water, and air. Microbes inhabit distinct microhabitats formed by...
Introduction to the Human Microbiota01:22

Introduction to the Human Microbiota

Microorganisms colonize various regions of the human body, including the mouth, nasal passages, throat, stomach, intestines, urogenital tract, and skin. The total number of microbial cells is estimated to range from 10¹³ to 10¹⁴—comparable to, or exceeding, the number of human somatic cells. This host–microbiome relationship has led to the conceptualization of humans as supraorganisms, wherein microbial communities perform vital roles in development, immunity, and disease...
Microbiota of the Large Intestine01:27

Microbiota of the Large Intestine

The large intestine hosts the most densely populated microbial ecosystem in the human body. This complex community primarily consists of anaerobic bacteria, with Bacillota (formerly Firmicutes) and Bacteroidota (formerly Bacteroidetes) as the predominant groups. The distribution of these microbes varies along different sections of the large intestine, influenced by local environmental factors such as oxygen availability and nutrient composition.The cecum, located at the beginning of the large...
The Oral Microbiota01:27

The Oral Microbiota

The oral microbiome includes a complex ecosystem comprising over 700 microbial species, identified through genomic sequencing and culture-based analyses to date. This community includes a core microbiome, found universally among individuals, and a variable component influenced by environmental factors such as diet, lifestyle, and host genetics. Site-specific conditions, including oxygen gradients, pH levels, and nutrient availability, determine the spatial distribution of these microorganisms...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

From "synthetic" to defined microbial communities for clearer terminology.

Nature communications·2026
Same author

Pseudomonas volatiles shape the root transcriptome and microbiome to promote plant growth under drought.

The New phytologist·2026
Same author

Downy mildew disease-suppressive soils transmit a protective core microbiome to the phyllosphere.

The ISME journal·2026
Same author

Microbiome responses to natural <i>Fusarium</i> infection in field-grown soybean plants.

Plant and soil·2026
Same author

Hypoxia induces phenotypic and metabolic shifts in endophytic Flavobacterium sp. 98.

The ISME journal·2025
Same author

The Extended Plant Immune System.

Molecular plant-microbe interactions : MPMI·2025

Related Experiment Video

Updated: May 10, 2026

Exploring the Root Microbiome: Extracting Bacterial Community Data from the Soil, Rhizosphere, and Root Endosphere
09:55

Exploring the Root Microbiome: Extracting Bacterial Community Data from the Soil, Rhizosphere, and Root Endosphere

Published on: May 2, 2018

The rhizosphere revisited: root microbiomics.

Peter A H M Bakker1, Roeland L Berendsen, Rogier F Doornbos

  • 1Plant-Microbe Interactions, Department of Biology, Faculty of Science, Utrecht University Utrecht, Netherlands.

Frontiers in Plant Science
|June 12, 2013
PubMed
Summary

The rhizosphere microbiome, crucial for plant health, harbors vast microbial diversity. Understanding how plant traits shape this microbiome in model plants like Arabidopsis thaliana is key for future research and applications.

Keywords:
Arabidopsis thalianaPseudomonas sppextended phenotypemicrobial communitiesplant roots

More Related Videos

Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments
10:31

Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments

Published on: July 24, 2018

An Approach to Constructing Multispecies Biofilm Communities from Rhizosphere Soil
04:29

An Approach to Constructing Multispecies Biofilm Communities from Rhizosphere Soil

Published on: May 24, 2024

Related Experiment Videos

Last Updated: May 10, 2026

Exploring the Root Microbiome: Extracting Bacterial Community Data from the Soil, Rhizosphere, and Root Endosphere
09:55

Exploring the Root Microbiome: Extracting Bacterial Community Data from the Soil, Rhizosphere, and Root Endosphere

Published on: May 2, 2018

Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments
10:31

Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments

Published on: July 24, 2018

An Approach to Constructing Multispecies Biofilm Communities from Rhizosphere Soil
04:29

An Approach to Constructing Multispecies Biofilm Communities from Rhizosphere Soil

Published on: May 24, 2024

Area of Science:

  • Plant Science
  • Microbiology
  • Ecology

Background:

  • The rhizosphere, the soil zone around plant roots, hosts vital microorganisms.
  • Recent research highlights the immense microbial diversity within the rhizosphere.
  • This microbial community significantly enhances plant functions.

Purpose of the Study:

  • To review current knowledge on rhizosphere microbiome research.
  • To discuss the role of Arabidopsis thaliana as a model organism in this field.
  • To explore future research directions and practical applications.

Main Methods:

  • Literature review of recent microbiome studies.
  • Focus on research utilizing Arabidopsis thaliana as a model system.

Main Results:

  • The rhizosphere microbiome possesses enormous microbial diversity.
  • This microbiome extends plant capabilities significantly.
  • Arabidopsis thaliana is a valuable model for studying microbiome interactions.

Conclusions:

  • Deciphering plant traits that influence microbiome selection is a major challenge.
  • Future research on the Arabidopsis thaliana microbiome will yield significant insights.
  • Knowledge gained has potential for broad applicability in agriculture and plant health.