Relaxation analysis of ligand binding to the myoglobin reconstituted with cobaltic heme

Saburo Neya1, Masaaki Suzuki, Tyuji Hoshino

  • 1Department of Physical Chemistry, Graduate School of Pharmaceutical Sciences, Chiba University, Chuoh-Inohana, Chiba 260-8675, Japan. sneya@faculty.chiba-u.jp

Inorganic Chemistry
|June 14, 2013
PubMed

Insights

Cobalt(III) myoglobin shows high ligand affinity due to slow dissociation, unlike iron(III) myoglobin. This binding behavior stems from cobalt

Area of Science:

  • Biochemistry
  • Bioinorganic Chemistry
  • Protein Chemistry

Background:

  • Myoglobin is a key protein for oxygen transport.
  • Iron(III) myoglobin exhibits distinct ligand-binding properties.
  • Early studies proposed different binding affinities for cobalt(III) myoglobin.

Purpose of the Study:

  • To investigate the ligand-binding affinities of myoglobin reconstituted with oxidized cobalt(III) deuteroheme.
  • To compare the binding kinetics and electronic spectral changes with iron(III) myoglobin.
  • To elucidate the underlying reasons for cobalt(III) myoglobin's unique ligation behavior.

Main Methods:

  • Reconstitution of myoglobin with oxidized cobalt(III) deuteroheme.
  • Spectroscopic analysis (electronic spectra) to observe ligand-induced changes.
  • Relaxation kinetic analysis to determine ligand association and dissociation rates.

Main Results:

  • Cobalt(III) myoglobin displayed significant affinities for cyanide, azide, thiocyanate, pyridine, and imidazole.
  • Ligand binding in cobalt(III) myoglobin showed less pronounced spectral shifts compared to iron(III) myoglobin due to the absence of spin-state transitions.
  • Kinetic analysis revealed slow association and even slower dissociation rates for ligands binding to cobalt(III) myoglobin.
  • The high ligand affinities in cobalt(III) myoglobin result from a compensation between slow association and very slow dissociation rates, contrasting with the fast association and slow dissociation typical of iron(III) myoglobin.

Conclusions:

  • Cobalt(III) myoglobin exhibits distinct ligand-binding characteristics compared to iron(III) myoglobin.
  • The unique behavior is attributed to the properties of cobalt(III), including its charge and stronger metal-ligand bond formation.
  • The findings challenge earlier proposals regarding cobalt(III) myoglobin's ligand affinities.

Related Concept Videos

The Equilibrium Binding Constant and Binding Strength02:18

The Equilibrium Binding Constant and Binding Strength

The equilibrium binding constant (Kb) quantifies the strength of a protein-ligand interaction. Kb can be calculated as follows when the reaction is at equilibrium:
The Equilibrium Binding Constant and Binding Strength02:18

The Equilibrium Binding Constant and Binding Strength

The equilibrium binding constant (Kb) quantifies the strength of a protein-ligand interaction. Kb can be calculated as follows when the reaction is at equilibrium:
Metal-Ligand Bonds02:51

Metal-Ligand Bonds

The hemoglobin in the blood, the chlorophyll in green plants, vitamin B-12, and the catalyst used in the manufacture of polyethylene all contain coordination compounds. Ions of the metals, especially the transition metals, are likely to form complexes.
In these complexes, transition metals form coordinate covalent bonds, a kind of Lewis acid-base interaction in which both of the electrons in the bond are contributed by a donor (Lewis base) to an electron acceptor (Lewis acid). The Lewis acid in...
Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
Colors and Magnetism03:02

Colors and Magnetism

Color in Coordination Complexes
When atoms or molecules absorb light at the proper frequency, their electrons are excited to higher-energy orbitals. For many main group atoms and molecules, the absorbed photons are in the ultraviolet range of the electromagnetic spectrum, which cannot be detected by the human eye. For coordination compounds, the energy difference between the d orbitals often allows photons in the visible range to be absorbed and emitted, which is seen as colors by the human eye.
Complexation Equilibria: Overview01:23

Complexation Equilibria: Overview

Complexation reactions take place when dative or coordinate covalent bonds form between metal ions and ligands. The compounds formed in these reactions are called coordination compounds. The number of bonds formed between the metal ion and the ligands is called its coordination number. Generally, most metal ions in an aqueous solution are solvated by water molecules and thus exist as aqua complexes.
The equilibrium constant of the complexation reaction is represented as the formation constant...