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Updated: May 9, 2026

Native Polyacrylamide Gel Electrophoresis Immunoblot Analysis of Endogenous IRF5 Dimerization
Published on: October 6, 2019
Atg5 regulates formation of MyD88 condensed structures and MyD88-dependent signal transduction
Megumi Inomata1, Takeshi Into, Shumpei Niida
1Department of Oral Microbiology, Division of Oral Infections and Health Sciences, Asahi University School of Dentistry, Mizuho, Gifu, Japan. inomata@dent.asahi-u.ac.jp
Abstract:
MyD88 is known as an essential adaptor protein for Toll-like receptors (TLRs). Previous studies have shown that transfected MyD88 forms condensed structures in the cytoplasm. However, upon TLR stimulation, there is little formation of endogenous MyD88 condensed structures. Thus, the formation of MyD88 condensed structures is tightly suppressed, but the mechanism and significance of this suppression are currently unknown. Here we show that Atg5, a key regulatory protein of autophagy, inhibits the formation of MyD88 condensed structures. We found that endogenous MyD88 had already formed condensed structures in Atg5-deficient cells and that the formation of condensed structures was further enhanced by TLR stimulation. This suppressive effect of Atg5 may not be associated with autophagic processes because MyD88 itself was not degraded and because TLR stimulation did not induce LC3 punctate formation and LC3 conversion. Immunoprecipitation analysis revealed that Atg5 could interact with MyD88. Furthermore, Atg5 deficiency increased formation of the MyD88-TRAF6 signaling complex induced by TLR stimulation, and it enhanced activation of NF-κB signaling but not MAPKs and Akt. These findings indicate that Atg5 regulates the formation of MyD88 condensed structures through association with MyD88 and eventually exerts a modulatory effect on MyD88-dependent signaling.
Insights
Autophagy protein Atg5 suppresses MyD88 condensed structures. Atg5 deficiency enhances MyD88-TRAF6 complex formation and NF-κB signaling activation, modulating Toll-like receptor signaling.
Area of Science:
- Immunology
- Cell Biology
- Molecular Biology
Background:
- Myeloid differentiation primary response 88 (MyD88) is a crucial adaptor protein for Toll-like receptors (TLRs).
- While transfected MyD88 forms cytoplasmic structures, endogenous MyD88 condensed structures are suppressed upon TLR stimulation, with the underlying mechanism and significance remaining unclear.
Purpose of the Study:
- To investigate the mechanism suppressing endogenous MyD88 condensed structure formation.
- To elucidate the role of autophagy protein Atg5 in regulating MyD88 condensed structures and downstream signaling.
Main Methods:
- Utilized Atg5-deficient cells to observe MyD88 structure formation.
- Performed immunoprecipitation to assess Atg5-MyD88 interaction.
- Analyzed MyD88-TRAF6 complex formation, NF-κB, MAPK, and Akt signaling activation following TLR stimulation.
Main Results:
- Endogenous MyD88 condensed structures formed in Atg5-deficient cells and were further enhanced by TLR stimulation.
- Atg5's suppressive effect on MyD88 structures was independent of canonical autophagy.
- Atg5 interacts with MyD88, and Atg5 deficiency potentiated MyD88-TRAF6 complex formation and NF-κB activation.
Conclusions:
- Atg5 directly inhibits the formation of MyD88 condensed structures through association with MyD88.
- Atg5 modulates MyD88-dependent signaling pathways, specifically impacting NF-κB activation.
- These findings reveal a novel regulatory role for Atg5 in innate immune signaling.
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