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In-gel total protein quantification using a ninhydrin-based method.

Sung Ung Kang1, Seok Heo, Gert Lubec

  • 1Department of Pediatrics, Medical University of Vienna, Währinger Gürtel 18, 1090, Vienna, Austria, sungung.kang@gmail.com.

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|July 10, 2013
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Summary
This summary is machine-generated.

This study presents a reliable method for in-gel protein quantification using proteinase K digestion and ninhydrin reaction. The protocol accurately quantifies both hydrophilic and hydrophobic proteins, improving upon less reliable existing methods.

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Area of Science:

  • Biochemistry
  • Molecular Biology
  • Proteomics

Background:

  • Accurate in-gel protein quantification is crucial for downstream analyses.
  • Existing methods for relative protein quantification are often unreliable due to variations in protein migration and staining intensity.

Purpose of the Study:

  • To develop a precise and reliable method for quantifying both hydrophilic and hydrophobic proteins directly within gels.
  • To provide a protocol compatible with mass spectrometry-based protein identification.

Main Methods:

  • In-gel digestion of proteins using proteinase K.
  • Extraction and acid hydrolysis of digested proteins.
  • Quantification using the ninhydrin reaction.
  • Validation using bovine serum albumin as a standard on SDS-PAGE and IEF/SDS-PAGE gels.
  • Quantification of hydrophobic bacteriorhodopsin on SDS-PAGE gel.

Main Results:

  • The developed method provides accurate and reproducible in-gel protein quantification.
  • The protocol is suitable for both hydrophilic and hydrophobic proteins.
  • The method is compatible with subsequent mass spectrometric analysis.
  • Bovine serum albumin and bacteriorhodopsin were successfully quantified.

Conclusions:

  • The described protocol offers a reliable alternative for in-gel protein quantification beyond arbitrary optical density units.
  • This method enhances the accuracy of protein quantification for various biochemical and molecular analyses.
  • While time-consuming (4-7 days), the protocol ensures high accuracy and compatibility with mass spectrometry.