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Updated: May 9, 2026

mirMachine: A One-Stop Shop for Plant miRNA Annotation
Published on: May 1, 2021
miRISC recruits decapping factors to miRNA targets to enhance their degradation
Tadashi Nishihara1, Latifa Zekri, Joerg E Braun
1Department of Biochemistry, Max Planck Institute for Developmental Biology, Spemannstrasse 35, 72076 Tübingen, Germany.
Abstract:
MicroRNA (miRNA)-induced silencing complexes (miRISCs) repress translation and promote degradation of miRNA targets. Target degradation occurs through the 5'-to-3' messenger RNA (mRNA) decay pathway, wherein, after shortening of the mRNA poly(A) tail, the removal of the 5' cap structure by decapping triggers irreversible decay of the mRNA body. Here, we demonstrate that miRISC enhances the association of the decapping activators DCP1, Me31B and HPat with deadenylated miRNA targets that accumulate when decapping is blocked. DCP1 and Me31B recruitment by miRISC occurs before the completion of deadenylation. Remarkably, miRISC recruits DCP1, Me31B and HPat to engineered miRNA targets transcribed by RNA polymerase III, which lack a cap structure, a protein-coding region and a poly(A) tail. Furthermore, miRISC can trigger decapping and the subsequent degradation of mRNA targets independently of ongoing deadenylation. Thus, miRISC increases the local concentration of the decapping machinery on miRNA targets to facilitate decapping and irreversibly shut down their translation.
Insights
MicroRNA-induced silencing complexes (miRISCs) recruit decapping factors to degrade messenger RNAs (mRNAs). This mechanism accelerates mRNA decay, even for uncapped or poly(A)-lacking targets, ensuring efficient gene silencing.
Area of Science:
- Molecular Biology
- Gene Regulation
- RNA Biology
Background:
- MicroRNA-induced silencing complexes (miRISCs) are key regulators of gene expression.
- miRISCs silence target genes by repressing translation and promoting messenger RNA (mRNA) degradation.
- mRNA decay involves deadenylation, decapping, and subsequent 5'-to-3' degradation.
Purpose of the Study:
- To investigate the role of miRISC in the mRNA decay pathway, specifically focusing on the decapping step.
- To determine if miRISC can recruit decapping factors independently of deadenylation.
- To elucidate the mechanism by which miRISC enhances mRNA degradation.
Main Methods:
- Utilizing engineered miRNA targets, including those transcribed by RNA polymerase III.
- Analyzing the recruitment of decapping activators (DCP1, Me31B, HPat) to miRNA targets.
- Investigating the interplay between deadenylation, decapping, and miRISC activity.
Main Results:
- miRISC enhances the association of decapping activators DCP1, Me31B, and HPat with deadenylated miRNA targets.
- Recruitment of DCP1 and Me31B by miRISC occurs prior to the completion of deadenylation.
- miRISC can recruit decapping factors and trigger mRNA decapping and degradation independently of ongoing deadenylation, even on uncapped and non-polyadenylated targets.
Conclusions:
- miRISC actively recruits the decapping machinery to miRNA targets, accelerating mRNA decay.
- This miRISC-mediated recruitment facilitates decapping and irreversible translation shutdown.
- The findings reveal a novel mechanism for miRISC-driven gene silencing that enhances the efficiency of mRNA degradation.
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