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Updated: May 9, 2026

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Antimicrobial resistance selection in avian pathogenic E. coli during treatment
Alexandra Dheilly1, Laetitia Le Devendec, Gwenaëlle Mourand
1ANSES, Laboratoire de Ploufragan, Unité Mycoplasmologie Bactériologie, 22440 Ploufragan, France.
Enrofloxacin (ENR) was most effective against avian pathogenic E. coli (APEC) in broilers, reducing bacterial recovery. However, amoxicillin (AMX) treatment led to resistant isolates possibly acquiring new resistance genes from intestinal bacteria.
Area of Science:
- Veterinary Microbiology
- Antimicrobial Resistance
- Poultry Health
Background:
- Colibacillosis, caused by avian pathogenic Escherichia coli (APEC), is a significant disease in poultry.
- Multidrug-resistant E. coli strains pose a growing threat, complicating treatment options.
- Understanding antimicrobial efficacy and resistance gene transfer is crucial for controlling poultry infections.
Purpose of the Study:
- To compare the microbiological efficacy of four antimicrobial treatments against experimental colibacillosis.
- To investigate the potential for antimicrobial resistance gene transfer during treatment.
- To evaluate the emergence of resistant E. coli isolates in internal organs of broilers.
Main Methods:
- Broilers were orally inoculated with multiresistant E. coli and subsequently infected with APEC.
- Birds received treatments including oxytetracycline, trimethoprim-sulphonamide, amoxicillin (AMX), or enrofloxacin (ENR).
- Internal organs were cultured on supplemented and non-supplemented media; molecular analysis was performed on resistant isolates.
Main Results:
- Enrofloxacin (ENR) significantly reduced APEC recovery (26%) compared to controls (47%).
- Other treatments showed no significant reduction in APEC recovery.
- Resistant isolates emerged, with one AMX-treated isolate showing potential plasmid-mediated resistance gene acquisition.
Conclusions:
- Enrofloxacin demonstrated superior microbiological efficacy in controlling experimental colibacillosis.
- Antimicrobial treatment can potentially drive the emergence and spread of resistant E. coli isolates.
- The study highlights the risk of acquiring resistance plasmids from the gut microbiota during treatment.
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