Lipid II-independent trans editing of mischarged tRNAs by the penicillin resistance factor MurM
Jennifer Shepherd1, Michael Ibba2
1From the Department of Microbiology and.
Abstract:
Streptococcus pneumoniae is a causative agent of nosocomial infections such as pneumonia, meningitis, and septicemia. Penicillin resistance in S. pneumoniae depends in part upon MurM, an aminoacyl-tRNA ligase that attaches L-serine or L-alanine to the stem peptide lysine of Lipid II in cell wall peptidoglycan. To investigate the exact substrates the translation machinery provides MurM, quality control by alanyl-tRNA synthetase (AlaRS) was investigated. AlaRS mischarged serine and glycine to tRNA(Ala), as observed in other bacteria, and also transferred alanine, serine, and glycine to tRNA(Phe). S. pneumoniae tRNA(Phe) has an unusual U4:C69 mismatch in its acceptor stem that prevents editing by phenylalanyl-tRNA synthetase (PheRS), leading to the accumulation of misaminoacylated tRNAs that could serve as substrates for translation or for MurM. Although the peptidoglycan layer of S. pneumoniae tolerates a combination of both branched and linear muropeptides, deletion of MurM results in a reversion to penicillin sensitivity in strains that were previously resistant. However, because MurM is not required for cell viability, the reason for its functional conservation across all strains of S. pneumoniae has remained elusive. We now show that MurM can directly function in translation quality control by acting as a broad specificity lipid-independent trans editing factor that deacylates tRNA. This activity of MurM does not require the presence of its second substrate, Lipid II, and can functionally substitute for the activity of widely conserved editing domain homologues of AlaRS, termed AlaXPs proteins, which are themselves absent from S. pneumoniae.
Insights
Streptococcus pneumoniae MurM protein, essential for penicillin resistance, acts as a translation quality control factor. It deacylates mischarged tRNAs, substituting for absent editing proteins and ensuring accuracy in bacterial protein synthesis.
Area of Science:
- Microbiology
- Molecular Biology
- Biochemistry
Background:
- * *Streptococcus pneumoniae* causes serious nosocomial infections like pneumonia and meningitis.
- * Penicillin resistance in *S. pneumoniae* is partly due to MurM, an enzyme involved in peptidoglycan synthesis.
- * The precise role of MurM and its substrates in bacterial physiology, particularly in translation quality control, remains unclear.
Purpose of the Study:
- * To investigate the substrates provided to MurM by the translation machinery.
- * To elucidate the function of alanyl-tRNA synthetase (AlaRS) in *S. pneumoniae*.
- * To determine the role of MurM in translation quality control and its conservation in *S. pneumoniae*.
Main Methods:
- * Investigated mischarging activities of alanyl-tRNA synthetase (AlaRS) with various tRNAs.
- * Analyzed the structure of *S. pneumoniae* tRNA(Phe) and its interaction with phenylalanyl-tRNA synthetase (PheRS).
- * Assessed the lipid-independent trans-editing activity of MurM on deacylating tRNA.
Main Results:
- * AlaRS mischarged serine and glycine to tRNA(Ala) and alanine, serine, and glycine to tRNA(Phe).
- * *S. pneumoniae* tRNA(Phe) possesses a unique structural feature preventing editing by PheRS, leading to misaminoacylated tRNA accumulation.
- * MurM functions as a broad-specificity, lipid-independent trans-editing factor, deacylating tRNA without needing Lipid II.
- * MurM's editing activity can substitute for the absent AlaXPs proteins, crucial editing homologues found in other bacteria.
Conclusions:
- * MurM plays a critical role in translation quality control in *S. pneumoniae* by editing mischarged tRNAs.
- * This editing function is essential for maintaining cellular accuracy, especially given the unique tRNA structure and absence of canonical editing proteins.
- * MurM's dual role in cell wall synthesis and translation quality control explains its functional conservation in *S. pneumoniae*.
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