Characterization of a nuclear localization signal in the foot-and-mouth disease virus polymerase

Maria Teresa Sanchez-Aparicio1, Maria Flora Rosas, Francisco Sobrino

  • 1Centro de Biología Molecular, "Severo Ochoa" (CSIC-UAM), Cantoblanco 28049, Madrid, Spain.

Virology
|July 27, 2013
PubMed

Insights

The MRKTKLAPT sequence in Foot-and-Mouth Disease Virus (FMDV) 3D protein acts as a nuclear localization signal (NLS). Mutations in key residues essential for virus multiplication indicate their importance for viral replication.

Area of Science:

  • Virology
  • Molecular Biology
  • Cell Biology

Background:

  • Foot-and-Mouth Disease Virus (FMDV) is a significant pathogen affecting livestock.
  • Understanding viral protein function, including intracellular localization, is crucial for developing control strategies.

Purpose of the Study:

  • To investigate if the MRKTKLAPT sequence (residues 16-24) in FMDV 3D protein functions as a nuclear localization signal (NLS).
  • To determine the role of specific residues within this sequence in viral replication.

Main Methods:

  • Site-directed mutagenesis was used to create K18E and K20E mutants in the FMDV 3D protein.
  • Transient expression assays were performed with wild-type and mutant 3D and 3CD proteins.
  • Green fluorescence protein (GFP) fusion constructs were utilized to assess nuclear localization.
  • Full-length FMDV RNA with introduced mutations was used to generate viruses.

Main Results:

  • Mutations K18E and K20E in the 3D protein and its precursor 3CD resulted in decreased nuclear localization.
  • Fusion of the MRKTKLAPT sequence to GFP enhanced its nuclear localization, an effect abolished by mutations.
  • Revertant FMDV viruses with K18 and K20 lysines were produced, replacing the introduced glutamate mutations.
  • The presence of lysines at positions 18 and 20 of 3D is essential for FMDV multiplication.

Conclusions:

  • The MRKTKLAPT sequence in FMDV 3D protein functions as a nuclear localization signal (NLS).
  • Lysine residues at positions 18 and 20 within this NLS are critical for FMDV replication and viral multiplication.

Related Concept Videos

Nuclear Localization Signals and Import01:46

Nuclear Localization Signals and Import

Proteins targeted to the nucleus carry short stretches of amino acid sequences called the nuclear localization signal or NLS. Classical nuclear localization signals are of two types: monopartite and bipartite NLS. Monopartite classical NLS (cNLS) consists of a single cluster of 4-8 amino acids. Bipartite cNLS consists of two clusters of  2-3 amino acids and a 9-12 residue long proline-rich linker bridging the two clusters. Signal clusters are rich in positively charged amino acids such as...
Regulation of Nuclear Protein Sorting01:45

Regulation of Nuclear Protein Sorting

Nuclear protein sorting regulates nucleus composition and gene expression, crucial for determining the fate of a eukaryotic cell. Hence, the entry and exit of molecules across the nuclear envelope is a tightly controlled process. Nuclear protein sorting can be inhibited by one of the following ways: 1) masking cargo signal sequences, 2) modifying the nuclear receptor's affinity for cargo, 3) controlling the nuclear pore size, 4) retaining the cargo during its transit to the cytosol or the...
Nuclear Export01:42

Nuclear Export

The nucleus restricts several proteins within and allows others to pass. The restricted proteins possess a nuclear retention sequence or NRS, anchoring them to the nuclear lamins and preventing their transport to the cytosol. The non-restricted proteins, after their synthesis, are transported to their site of action, such as the cytosol or other organelles, with the help of nuclear export signals or NES.
NES are of three types- the canonical 10-residue long leucine-rich signal and other...
Leaky Scanning02:28

Leaky Scanning

During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R stands for...
Nuclear Protein Sorting01:34

Nuclear Protein Sorting

Nuclear protein sorting is the selective trafficking of histones, polymerases, gene regulatory proteins into the nucleus and exporting RNAs and ribosomes to the cytosol. It is a tightly controlled process that regulates gene expression within a cell.
Proteins targeted to the nucleus carry nuclear localization signals or NLS recognized by import receptors in the cytosol. Similarly, proteins with nuclear export signals are recognized by export receptors. Import and export receptors are...
Nuclear Export of mRNA02:31

Nuclear Export of mRNA

Before mRNAs are exported to the cytoplasm, it is crucial to check each mRNA for structural and functional integrity. Eukaryotic cells use several different mechanisms, collectively known as mRNA surveillance, to look for irregularities in mRNAs. Irregular or aberrant mRNA are rapidly degraded by various enzymes. If a defective mRNA escapes the surveillance, it would be translated into a protein which would either be non-functional or not function properly. One of the primary irregularities in...