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Updated: May 9, 2026

A Semi-Quantitative Drug Affinity Responsive Target Stability (DARTS) assay for studying Rapamycin/mTOR interaction
Published on: August 27, 2019
mTORC1 phosphorylation sites encode their sensitivity to starvation and rapamycin
Seong A Kang1, Michael E Pacold, Christopher L Cervantes
1Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA 02142, USA.
Abstract:
The mechanistic target of rapamycin (mTOR) complex 1 (mTORC1) protein kinase promotes growth and is the target of rapamycin, a clinically useful drug that also prolongs life span in model organisms. A persistent mystery is why the phosphorylation of many bona fide mTORC1 substrates is resistant to rapamycin. We find that the in vitro kinase activity of mTORC1 toward peptides encompassing established phosphorylation sites varies widely and correlates strongly with the resistance of the sites to rapamycin, as well as to nutrient and growth factor starvation within cells. Slight modifications of the sites were sufficient to alter mTORC1 activity toward them in vitro and to cause concomitant changes within cells in their sensitivity to rapamycin and starvation. Thus, the intrinsic capacity of a phosphorylation site to serve as an mTORC1 substrate, a property we call substrate quality, is a major determinant of its sensitivity to modulators of the pathway. Our results reveal a mechanism through which mTORC1 effectors can respond differentially to the same signals.
Insights
The mechanistic target of rapamycin (mTOR) complex 1 (mTORC1) pathway
Area of Science:
- Cellular signaling pathways
- Molecular mechanisms of cell growth regulation
Background:
- The mechanistic target of rapamycin (mTOR) complex 1 (mTORC1) is a key regulator of cell growth.
- Rapamycin is a drug targeting mTORC1 that extends lifespan in model organisms, but its effects on substrate phosphorylation are not fully understood.
Purpose of the Study:
- To investigate why certain mTORC1 substrates are resistant to rapamycin.
- To identify the determinants of substrate sensitivity to mTORC1 pathway modulators.
Main Methods:
- In vitro kinase assays using peptides representing mTORC1 phosphorylation sites.
- Cellular experiments assessing substrate phosphorylation sensitivity to rapamycin and starvation.
Main Results:
- mTORC1 kinase activity varies significantly across different phosphorylation sites.
- In vitro activity strongly correlates with in-cell resistance to rapamycin and starvation.
- Minor modifications to phosphorylation sites alter mTORC1 activity and cellular sensitivity to pathway modulators.
Conclusions:
- Substrate quality, defined as the intrinsic capacity of a phosphorylation site to act as an mTORC1 substrate, is a key determinant of sensitivity to rapamycin and starvation.
- This finding reveals a mechanism for differential regulation of mTORC1 effectors by common signals.
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