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Related Concept Videos

Translesion DNA Polymerases02:10

Translesion DNA Polymerases

Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
Homologous Recombination02:31

Homologous Recombination

The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
Restarting Stalled Replication Forks02:37

Restarting Stalled Replication Forks

DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart, a...
Nucleotide Excision Repair01:08

Nucleotide Excision Repair

Overview
Nucleotide Excision Repair01:38

Nucleotide Excision Repair

DNA Distortion and Damage
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
The DNA Replication Fork01:02

The DNA Replication Fork

An organism’s genome needs to be duplicated in an efficient and error-free manner for its growth and survival. The replication fork is a Y-shaped active region where two strands of DNA are separated and replicated continuously. The coupling of DNA unzipping and complementary strand synthesis is a characteristic feature of a replication fork.   Organisms with small circular DNA, such as E. coli, often have a single origin of replication; therefore, they have only two replication forks, one in...

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Related Experiment Video

Updated: May 9, 2026

Detection of Homologous Recombination Intermediates via Proximity Ligation and Quantitative PCR in Saccharomyces cerevisiae
07:55

Detection of Homologous Recombination Intermediates via Proximity Ligation and Quantitative PCR in Saccharomyces cerevisiae

Published on: September 11, 2022

Rapid, isothermal DNA self-replication induced by a destabilizing lesion.

Abu Kausar1, Catherine J Mitran, Yimeng Li

  • 1Department of Chemistry, University of Alberta, Edmonton, AB, T6G 2G2 (Canada) http://www.chem.ualberta.ca/∼gibbsdavis.

Angewandte Chemie (International Ed. in English)
|August 8, 2013
PubMed
Summary

Rapid DNA self-replication was achieved using a destabilizing abasic site and high ligase concentration in isothermal ligase chain reaction (LCR). This breakthrough offers insights into early nucleotide replication and potential biodiagnostic applications.

Keywords:
DNA replicationautonomous replicationisothermal DNA amplificationoligonucleotidesorigins of life

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Area of Science:

  • Biochemistry
  • Molecular Biology
  • Synthetic Biology

Background:

  • The Ligase Chain Reaction (LCR) is a method for amplifying nucleic acids.
  • Understanding DNA replication mechanisms is crucial for various biological applications.

Purpose of the Study:

  • To develop a rapid DNA self-replication method using isothermal Ligase Chain Reaction (LCR).
  • To investigate the role of destabilizing abasic sites and high ligase concentrations in DNA replication.
  • To explore potential applications in prebiotic nucleotide replication and biodiagnostics.

Main Methods:

  • Utilized a destabilizing abasic site within the DNA template.
  • Employed a high concentration of ligase enzyme.
  • Performed isothermal Ligase Chain Reaction (LCR) for DNA amplification.

Main Results:

  • Achieved rapid, self-replicating DNA synthesis under isothermal conditions.
  • Demonstrated that both template destabilization and rapid ligation are critical for efficient LCR replication.
  • The developed method shows promise for amplifying nucleic acids.

Conclusions:

  • A novel method for rapid DNA self-replication via isothermal LCR has been established.
  • The findings provide valuable insights into the mechanisms of prebiotic nucleotide replication.
  • This technique holds potential as an amplification strategy for biodiagnostic assays.