Related Experiment Video
Updated: May 9, 2026

Characterizing DNA Repair Processes at Transient and Long-lasting Double-strand DNA Breaks by Immunofluorescence Microscopy
Published on: June 8, 2018
ATM is required for the repair of Topotecan-induced replication-associated double-strand breaks
Sabrina Köcher1, Anja Spies-Naumann, Malte Kriegs
1Heinrich-Pette-Institute Leibniz-Institute for Experimental Virology, Hamburg, Germany; Institute of Radiobiology and Molecular Radiation Oncology, Philipps-University of Marburg, Germany.
Purpose:
DNA replication is a promising target for anti-cancer therapies. Therefore, the understanding of replication-associated DNA repair mechanisms is of great interest. One key factor of DNA double-strand break (DSB) repair is the PIK kinase Ataxia-Telangiectasia Mutated (ATM) but it is still unclear whether ATM is involved in the repair of replication-associated DSBs. Here, we focused on the involvement of ATM in homology-directed repair (HDR) of indirect DSBs associated with replication.
Material And Methods:
Experiments were performed using ATM-deficient and -proficient human cells. Replication-associated DSBs were induced with Topotecan (TPT) and compared with γ-irradiation (IR). Cell survival was measured by clonogenic assay. Overall DSB repair and HDR were evaluated by detecting residual γH2AX/53BP1 and Rad51 foci, respectively. Cell cycle distribution was analysed by flow cytometry and protein expression by Western blot.
Results:
ATM-deficiency leads to enhanced numbers of residual DSBs, resulting in a pronounced S/G2-block and decreased survival upon TPT-treatment. In common with IR, persisting Rad51 foci were detected following TPT-treatment.
Conclusions:
These results demonstrate that ATM is essentially required for the completion of HR-mediated repair of TPT-induced DSBs formed indirectly at replication forks.
Insights
The Ataxia-Telangiectasia Mutated (ATM) kinase is crucial for repairing DNA double-strand breaks (DSBs) that occur during replication. This study shows ATM is essential for homology-directed repair of Topotecan-induced DSBs at replication forks.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- DNA replication is a critical process and a target for anti-cancer drugs.
- Understanding DNA repair mechanisms, especially those associated with replication, is vital for developing effective therapies.
- The role of Ataxia-Telangiectasia Mutated (ATM) kinase in repairing replication-associated DNA double-strand breaks (DSBs) remains unclear.
Purpose of the Study:
- To investigate the involvement of ATM in the homology-directed repair (HDR) of DSBs that arise indirectly during DNA replication.
- To determine if ATM plays a role in repairing replication-associated DSBs induced by Topotecan (TPT).
Main Methods:
- Experiments utilized ATM-deficient and ATM-proficient human cells.
- Replication-associated DSBs were induced using Topotecan (TPT) and compared to γ-irradiation (IR).
- Assessed cell survival, DSB repair (γH2AX/53BP1 foci), HDR (Rad51 foci), cell cycle distribution, and protein expression.
Main Results:
- ATM-deficiency resulted in increased residual DSBs, S/G2 cell cycle arrest, and reduced survival after TPT treatment.
- Persistent Rad51 foci were observed after TPT treatment, similar to IR, indicating HDR involvement.
- ATM plays a significant role in the repair of TPT-induced DSBs during replication.
Conclusions:
- ATM is essential for the complete homology-directed repair of Topotecan-induced DSBs that occur indirectly at replication forks.
- These findings highlight ATM's critical role in maintaining genomic stability during DNA replication under genotoxic stress.
Related Concept Videos
DNA Damage can Stall the Cell Cycle
DNA Damage Can Stall the Cell Cycle
Homologous Recombination
Fixing Double-strand Breaks
Fixing Double-strand Breaks
DNA Topoisomerases
Types and Mechanism of action
Topoisomerases are divided into two main types. Type I...

