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Updated: May 8, 2026

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
Molecular and cytogenetic changes in multi-drug resistant cancer cells and their influence on new compounds testing
Ana Podolski-Renić1, Milka Jadranin, Tijana Stanković
1Department of Neurobiology, Institute for Biological Research, University of Belgrade, Bulevar Despota Stefana 142, Belgrade, Serbia.
Purpose:
Multi-drug resistance (MDR) is a major obstacle to successful cancer treatment. Therefore, in vitro models are necessary for the investigation of the phenotypic changes provoked by cytotoxic agents and more importantly for preclinical testing of new anticancer drugs.
Methods:
We analyzed chromosomal, numerical, and structural changes after development of MDR, alterations in p53 and PTEN, single nucleotide polymorphisms (SNPs) in the mdr1 gene and corresponding protein expression of P-glycoprotein (P-gp) in three human MDR cancer cell lines: non-small cell lung carcinoma NCI-H460/R, colorectal carcinoma DLD1-TxR, and glioma U87-TxR. In addition, we explored how these molecular and phenotypic alterations influence the anticancer effect of new drugs.
Results:
Cytogenetic analysis showed polyploidy reduction after development of MDR in U87-TxR. Losses of 6q in all resistant cancer cell lines and inactivation of p53 in U87-TxR and PTEN in DLD1-TxR were also revealed. Overexpression of P-gp was observed in all MDR cancer cell lines. We evaluated the anticancer activities and MDR reversal potential of Akt inhibitor GSK690693, Ras inhibitor Tipifarnib, and two P-gp inhibitors (jatrophane diterpenoids). Their effects vary due to the cell-type differences, existence of MDR phenotype, presence of mdr1 SNP, and tumor suppressors' alterations. Tipifarnib and jatrophane diterpenoids significantly sensitized MDR cancer cells to paclitaxel.
Conclusion:
In conclusion, investigated MDR cancer cells obtained new molecular and cytogenetic characteristics that may serve as potential clinical prognostic markers. In addition, these MDR cancer cell lines present a valuable model for preclinical evaluation of new anticancer agents.
Insights
Multi-drug resistance (MDR) in cancer cells leads to genetic changes like chromosomal alterations and P-glycoprotein (P-gp) overexpression. These MDR models are crucial for testing new anticancer drugs and identifying potential prognostic markers.
Area of Science:
- Oncology
- Cancer Biology
- Molecular Genetics
Background:
- Multi-drug resistance (MDR) presents a significant challenge in effective cancer therapy.
- In vitro models are essential for studying phenotypic changes induced by cytotoxic agents and for preclinical drug evaluation.
Purpose of the Study:
- To investigate chromosomal, numerical, and structural changes in multi-drug resistant (MDR) cancer cell lines.
- To analyze alterations in p53 and PTEN, and mdr1 gene single nucleotide polymorphisms (SNPs) and P-glycoprotein (P-gp) expression.
- To evaluate the impact of these molecular changes on the efficacy of novel anticancer drugs.
Main Methods:
- Analysis of cytogenetic changes, p53 and PTEN status, mdr1 gene SNPs, and P-gp expression in three human MDR cancer cell lines (NCI-H460/R, DLD1-TxR, U87-TxR).
- Assessment of anticancer activities and MDR reversal potential of an Akt inhibitor (GSK690693), a Ras inhibitor (Tipifarnib), and two P-gp inhibitors.
- Evaluation of drug responses based on cell type, MDR phenotype, mdr1 SNP presence, and tumor suppressor alterations.
Main Results:
- Development of MDR was associated with polyploidy reduction (U87-TxR), 6q loss (all lines), p53 inactivation (U87-TxR), and PTEN inactivation (DLD1-TxR).
- Overexpression of P-gp was observed in all MDR cell lines.
- Tipifarnib and jatrophane diterpenoids demonstrated significant MDR reversal, sensitizing cancer cells to paclitaxel, with varying effects influenced by molecular characteristics.
Conclusions:
- Acquired molecular and cytogenetic characteristics in MDR cancer cells may serve as potential clinical prognostic markers.
- These characterized MDR cell lines provide a valuable platform for the preclinical assessment of novel anticancer agents.
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