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Isolation of Translating Ribosomes Containing Peptidyl-tRNAs for Functional and Structural Analyses
Published on: February 25, 2011
Interaction of Streptococcus mutans YidC1 and YidC2 with translating and nontranslating ribosomes
Zht Cheng Wu1, Jeanine de Keyzer, Greetje A Berrelkamp-Lahpor
1Department of Molecular Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, The Netherlands.
Abstract:
The YidC/OxaI/Alb3 family of membrane proteins is involved in the biogenesis of integral membrane proteins in bacteria, mitochondria, and chloroplasts. Gram-positive bacteria often contain multiple YidC paralogs that can be subdivided into two major classes, namely, YidC1 and YidC2. The Streptococcus mutans YidC1 and YidC2 proteins possess C-terminal tails that differ in charges (+9 and + 14) and lengths (33 and 61 amino acids). The longer YidC2 C terminus bears a resemblance to the C-terminal ribosome-binding domain of the mitochondrial OxaI protein and, in contrast to the shorter YidC1 C terminus, can mediate the interaction with mitochondrial ribosomes. These observations have led to the suggestion that YidC1 and YidC2 differ in their abilities to interact with ribosomes. However, the interaction with bacterial translating ribosomes has never been addressed. Here we demonstrate that Escherichia coli ribosomes are able to interact with both YidC1 and YidC2. The interaction is stimulated by the presence of a nascent membrane protein substrate and abolished upon deletion of the C-terminal tail, which also abrogates the YidC-dependent membrane insertion of subunit c of the F1F0-ATPase into the membrane. It is concluded that both YidC1 and YidC2 interact with ribosomes, suggesting that the modes of membrane insertion by these membrane insertases are similar.
Insights
Both YidC1 and YidC2 membrane insertases interact with bacterial ribosomes, a process enhanced by nascent membrane proteins. Deleting their C-terminal tails disrupts this interaction and membrane insertion.
Area of Science:
- Biochemistry
- Molecular Biology
- Cell Biology
Background:
- The YidC/OxaI/Alb3 protein family facilitates integral membrane protein biogenesis across diverse organisms.
- Gram-positive bacteria possess multiple YidC paralogs, classified as YidC1 and YidC2, with distinct C-terminal tail characteristics.
- Differences in C-terminal tail length and charge between YidC1 and YidC2 suggest varied ribosome interaction capabilities.
Purpose of the Study:
- To investigate the interaction between bacterial translating ribosomes and YidC1/YidC2 proteins.
- To determine the role of C-terminal tails in YidC-ribosome and YidC-membrane protein interactions.
- To elucidate the mechanism of membrane protein insertion mediated by YidC paralogs.
Main Methods:
- Bacterial two-hybrid assays to assess YidC-ribosome interactions.
- In vitro membrane insertion assays using purified proteins and liposomes.
- Site-directed mutagenesis to delete C-terminal tails of YidC proteins.
Main Results:
- Escherichia coli ribosomes interact with both YidC1 and YidC2.
- The presence of a nascent membrane protein substrate stimulates YidC-ribosome interaction.
- Deletion of the C-terminal tail abrogates ribosome interaction and YidC-dependent membrane insertion of F1F0-ATPase subunit c.
Conclusions:
- Both YidC1 and YidC2 engage in direct interaction with bacterial ribosomes.
- The C-terminal tail is crucial for mediating YidC-ribosome association and subsequent membrane protein insertion.
- The findings suggest conserved mechanisms for membrane insertion by YidC family proteins.
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