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Published on: June 12, 2018
Mechanisms of Lin28-mediated miRNA and mRNA regulation--a structural and functional perspective
1Crystallography, Max-Delbrück Center for Molecular Medicine, Berlin 13125, Germany. florian.mayr@mdc-berlin.de
Abstract:
Lin28 is an essential RNA-binding protein that is ubiquitously expressed in embryonic stem cells. Its physiological function has been linked to the regulation of differentiation, development, and oncogenesis as well as glucose metabolism. Lin28 mediates these pleiotropic functions by inhibiting let-7 miRNA biogenesis and by modulating the translation of target mRNAs. Both activities strongly depend on Lin28's RNA-binding domains (RBDs), an N-terminal cold-shock domain (CSD) and a C-terminal Zn-knuckle domain (ZKD). Recent biochemical and structural studies revealed the mechanisms of how Lin28 controls let-7 biogenesis. Lin28 binds to the terminal loop of pri- and pre-let-7 miRNA and represses their processing by Drosha and Dicer. Several biochemical and structural studies showed that the specificity of this interaction is mainly mediated by the ZKD with a conserved GGAGA or GGAGA-like motif. Further RNA crosslinking and immunoprecipitation coupled to high-throughput sequencing (CLIP-seq) studies confirmed this binding motif and uncovered a large number of new mRNA binding sites. Here we review exciting recent progress in our understanding of how Lin28 binds structurally diverse RNAs and fulfills its pleiotropic functions.
Insights
Lin28, an RNA-binding protein, regulates cell functions by controlling microRNA and mRNA. Its RNA-binding domains are key to its diverse roles in development and disease.
Area of Science:
- Molecular Biology
- Developmental Biology
- Cancer Biology
Background:
- Lin28 is a crucial RNA-binding protein in embryonic stem cells.
- It influences differentiation, development, oncogenesis, and glucose metabolism.
- Lin28 functions by inhibiting let-7 microRNA (miRNA) biogenesis and modulating mRNA translation.
Purpose of the Study:
- To review recent advancements in understanding Lin28's RNA-binding mechanisms.
- To elucidate how Lin28's structural domains contribute to its functions.
- To explore Lin28's interaction with diverse RNA molecules.
Main Methods:
- Biochemical and structural studies.
- RNA crosslinking and immunoprecipitation coupled to high-throughput sequencing (CLIP-seq).
Main Results:
- Lin28 binds to pri- and pre-let-7 miRNA, inhibiting their processing by Drosha and Dicer.
- The Zinc-knuckle domain (ZKD) is critical for specific binding to GGAGA motifs in let-7 precursors.
- CLIP-seq identified numerous mRNA targets, expanding the known RNA-binding landscape of Lin28.
Conclusions:
- Lin28 utilizes its RNA-binding domains (RBDs), including the cold-shock domain (CSD) and ZKD, to regulate gene expression.
- Structural insights reveal how Lin28 represses let-7 miRNA biogenesis.
- Recent studies highlight Lin28's broad RNA-binding capabilities and its multifaceted roles.
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