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Updated: May 8, 2026

MicroRNA Amplification and Recognition through Locked-nucleic-acid In situ Hybridization as a Novel Detection and Quantification Method
Published on: October 7, 2025
Identification of lethal microRNAs specific for head and neck cancer
Marlon Lindenbergh-van der Plas1, Sanne R Martens-de Kemp, Michiel de Maaker
1Authors' Affiliations: Departments of Otolaryngology/Head-Neck Surgery, Epidemiology and Biostatistics, and Pathology, VU University Medical Center; Department of Mathematics, VU University; Division of Gene Regulation, The Netherlands Cancer Institute, Amsterdam; and InteRNA Technologies BV, Utrecht, The Netherlands.
Purpose:
The prognosis of head and neck squamous cell carcinomas (HNSCC) remains disappointing and the development of novel anti-cancer agents is urgently awaited. We identified by a functional genetic screen microRNAs that are selectively lethal for head and neck cancer cells but not for normal cells. We further investigated the genes targeted by these microRNAs.
Experimental Design:
A retroviral expression library of human microRNAs was introduced in HNSCC cell lines and normal oropharyngeal keratinocytes to identify tumor-selective lethal microRNAs. Potential downstream gene targets of these microRNAs were identified by gene expression profiling and validated by functional assays.
Results:
We identified six microRNAs that selectively inhibit proliferation of head and neck cancer cells. By gene expression profiling and 3'-untranslated region (UTR) luciferase reporter assays, we showed that the ataxia telangiectasia mutated (ATM) gene is a common target for at least two and likely three of these microRNAs. Specific inhibition of ATM resulted in a similar tumor-specific lethal effect, whereas the phenotype was reverted in rescue experiments.
Conclusions:
These six microRNAs might be developed as novel anti-cancer agents and highlight ATM as an interesting novel therapeutic target for head and neck cancer.
Insights
Researchers discovered six microRNAs that kill head and neck cancer cells but not normal cells. These microRNAs target the ATM gene, offering a potential new therapy for head and neck squamous cell carcinomas.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Head and neck squamous cell carcinomas (HNSCC) have a poor prognosis, necessitating new therapeutic strategies.
- MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression and have roles in cancer development.
- Identifying tumor-specific lethal miRNAs could lead to novel anti-cancer treatments.
Purpose of the Study:
- To identify microRNAs that selectively kill HNSCC cells.
- To investigate the genes targeted by these tumor-selective lethal miRNAs.
- To evaluate the therapeutic potential of these miRNAs and their targets in HNSCC.
Main Methods:
- Functional genetic screening using a retroviral expression library of human miRNAs in HNSCC cell lines and normal keratinocytes.
- Gene expression profiling to identify downstream targets of candidate miRNAs.
- 3'-untranslated region (UTR) luciferase reporter assays and functional assays to validate miRNA targets.
Main Results:
- Six microRNAs were identified that selectively inhibit HNSCC cell proliferation.
- The ataxia telangiectasia mutated (ATM) gene was identified as a common target for multiple identified miRNAs.
- Inhibition of ATM mimicked the tumor-specific lethal effect of the miRNAs, and rescue experiments confirmed this finding.
Conclusions:
- The identified six microRNAs show potential as novel anti-cancer agents for HNSCC.
- The ataxia telangiectasia mutated (ATM) gene represents a promising therapeutic target for head and neck cancer treatment.
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