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Modelling under-reporting in epidemics
Kokouvi M Gamado1, George Streftaris, Stan Zachary
1Biomathematics and Statistics Scotland, Kings Buildings, Edinburgh, EH9 3JZ, UK, kokouvi@bioss.ac.uk.
Abstract:
Under-reporting of infected cases is crucial for many diseases because of the bias it can introduce when making inference for the model parameters. The objective of this paper is to study the effect of under-reporting in epidemics by considering the stochastic Markovian SIR epidemic in which various reporting processes are incorporated. In particular, we first investigate the effect on the estimation process of ignoring under-reporting when it is present in an epidemic outbreak. We show that such an approach leads to under-estimation of the infection rate and the reproduction number. Secondly, by allowing for the fact that under-reporting is occurring, we develop suitable models for estimation of the epidemic parameters and explore how well the reporting rate and other model parameters can be estimated. We consider the case of a constant reporting probability and also more realistic assumptions which involve the reporting probability depending on time or the source of infection for each infected individual. Due to the incomplete nature of the data and reporting process, the Bayesian approach provides a natural modelling framework and we perform inference using data augmentation and reversible jump Markov chain Monte Carlo techniques.
Insights
Ignoring under-reporting in epidemic models leads to inaccurate infection rates and reproduction numbers. This study develops models to accurately estimate epidemic parameters, even with incomplete case data.
Area of Science:
- Epidemiology
- Mathematical Biology
- Biostatistics
Background:
- Under-reporting of infectious cases introduces significant bias in epidemic modeling.
- Accurate parameter estimation is vital for understanding disease dynamics and implementing control strategies.
Purpose of the Study:
- To investigate the impact of ignoring under-reporting on epidemic model parameter estimation.
- To develop and evaluate models that account for under-reporting in stochastic SIR (Susceptible-Infected-Recovered) epidemic models.
- To assess the estimability of reporting rates and other epidemic parameters under various reporting scenarios.
Main Methods:
- Stochastic Markovian SIR epidemic modeling incorporating diverse reporting processes.
- Bayesian inference framework utilizing data augmentation and reversible jump Markov chain Monte Carlo (MCMC) techniques.
- Analysis of constant, time-dependent, and source-dependent reporting probabilities.
Main Results:
- Ignoring under-reporting leads to under-estimation of the infection rate and reproduction number.
- Models accounting for under-reporting allow for more accurate estimation of epidemic parameters.
- The Bayesian approach with MCMC effectively handles incomplete data and complex reporting mechanisms.
Conclusions:
- Under-reporting significantly biases epidemic parameter estimation, necessitating its explicit inclusion in models.
- The developed Bayesian framework provides a robust method for estimating epidemic parameters even with incomplete reporting.
- Accurate estimation of reporting rates is feasible and crucial for reliable epidemic forecasting and management.
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