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Key pathways and genes controlling the development and progression of clear cell renal cell carcinoma (ccRCC) based
Haipeng Huang1, Yanyan Tang, Wenwu He
1Department of Urinary Surgery, The First Affiliated Hospital, Guangxi Medical University, 6th Shuangyong Road, Nanning, 530021, Guangxi, China.
Background:
Clear-cell renal cell carcinoma (ccRCC) is one of the most common types of kidney cancer in adults; however, its causes are not completely understood. The study was designed to filter the key pathways and genes associated with the occurrence or development of ccRCC, acquaint its pathogenesis at gene and pathway level, to provide more theory evidence and targeted therapy for ccRCC.
Methods:
Gene set enrichment analysis (GSEA) and meta-analysis (Meta) were used to screen the critical pathways and genes which may affect the occurrence and progression of ccRCC on the transcription level. Corresponding pathways of significant genes were obtained with the online website DAVID ( http://david.abcc.ncifcrf.gov/ ).
Results:
Thirty seven consistent pathways and key genes in these pathways related to ccRCC were obtained with combined GSEA and meta-analysis. These pathways were mainly involved in metabolism, organismal systems, cellular processes and environmental information processing.
Conclusion:
The gene pathways that we identified could provide insight concerning the development of ccRCC. Further studies are needed to determine the biological function for the positive genes.
Insights
This study identified 37 key gene pathways linked to clear-cell renal cell carcinoma (ccRCC) development using GSEA and meta-analysis. These findings offer insights into ccRCC pathogenesis and potential targeted therapies.
Area of Science:
- Oncology
- Genetics
- Bioinformatics
Background:
- Clear-cell renal cell carcinoma (ccRCC) is a prevalent adult cancer with incompletely understood origins.
- Identifying key molecular drivers is crucial for advancing ccRCC treatment strategies.
Purpose of the Study:
- To identify critical pathways and genes involved in ccRCC occurrence and progression.
- To elucidate ccRCC pathogenesis at the gene and pathway levels.
- To provide theoretical evidence for developing targeted ccRCC therapies.
Main Methods:
- Utilized Gene Set Enrichment Analysis (GSEA) and meta-analysis (Meta) to screen for significant pathways and genes.
- Employed the DAVID online tool to identify pathways associated with significant genes.
- Focused on transcriptional level analysis for ccRCC progression.
Main Results:
- Identified 37 consistent pathways and key genes associated with ccRCC.
- These pathways are primarily involved in metabolism, organismal systems, cellular processes, and environmental information processing.
- The analysis revealed significant molecular signatures related to ccRCC development.
Conclusions:
- The identified gene pathways provide valuable insights into ccRCC development.
- Further research is warranted to determine the specific biological functions of the identified genes.
- These findings may pave the way for novel therapeutic interventions in ccRCC.
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