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Updated: May 8, 2026

Spectral Karyotyping to Study Chromosome Abnormalities in Humans and Mice with Polycystic Kidney Disease
Published on: February 3, 2012
NEK8 links the ATR-regulated replication stress response and S phase CDK activity to renal ciliopathies
Hyo Jei Claudia Choi1, Jia-Ren Lin, Jean-Baptiste Vannier
1Department of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA 94025, USA.
Abstract:
Renal ciliopathies are a leading cause of kidney failure, but their exact etiology is poorly understood. NEK8/NPHP9 is a ciliary kinase associated with two renal ciliopathies in humans and mice, nephronophthisis (NPHP) and polycystic kidney disease. Here, we identify NEK8 as a key effector of the ATR-mediated replication stress response. Cells lacking NEK8 form spontaneous DNA double-strand breaks (DSBs) that further accumulate when replication forks stall, and they exhibit reduced fork rates, unscheduled origin firing, and increased replication fork collapse. NEK8 suppresses DSB formation by limiting cyclin A-associated CDK activity. Strikingly, a mutation in NEK8 that is associated with renal ciliopathies affects its genome maintenance functions. Moreover, kidneys of NEK8 mutant mice accumulate DNA damage, and loss of NEK8 or replication stress similarly disrupts renal cell architecture in a 3D-culture system. Thus, NEK8 is a critical component of the DNA damage response that links replication stress with cystic kidney disorders.
Insights
NEK8 kinase is crucial for kidney health, preventing DNA damage and kidney failure in renal ciliopathies. Loss of NEK8 function leads to DNA breaks and kidney cyst development.
Area of Science:
- Genetics
- Molecular Biology
- Cell Biology
Background:
- Renal ciliopathies cause kidney failure, with unclear causes.
- NEK8/NPHP9 kinase links to nephronophthisis and polycystic kidney disease.
Purpose of the Study:
- Investigate NEK8's role in the DNA damage response.
- Connect NEK8 function to renal ciliopathy pathogenesis.
Main Methods:
- Studied NEK8-deficient cells and NEK8 mutant mice.
- Analyzed DNA double-strand breaks (DSBs) and replication fork dynamics.
- Utilized 3D kidney cell culture models.
Main Results:
- NEK8-deficient cells accumulate spontaneous DSBs and replication stress.
- NEK8 limits cyclin A-associated CDK activity to suppress DSBs.
- A disease-associated NEK8 mutation impairs genome maintenance.
- NEK8 loss or replication stress disrupts kidney cell structure.
Conclusions:
- NEK8 is a key DNA damage response protein.
- NEK8 links replication stress to cystic kidney disorders.
- NEK8's genome maintenance role is vital for preventing kidney disease.
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