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Updated: May 8, 2026

Hybrid Ensemble and Single-molecule Assay to Image the Motion of Fully Reconstituted CMG
Published on: July 26, 2024
The mini-chromosome maintenance (Mcm) complexes interact with DNA polymerase α-primase and stimulate its ability to
Zhiying You1, Mariarosaria De Falco, Katsuhiko Kamada
1Genome Dynamics Project, Department of Genome Medicine, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan. takai-yk@igakuken.or.jp
Abstract:
The Mini-chromosome maintenance (Mcm) proteins are essential as central components for the DNA unwinding machinery during eukaryotic DNA replication. DNA primase activity is required at the DNA replication fork to synthesize short RNA primers for DNA chain elongation on the lagging strand. Although direct physical and functional interactions between helicase and primase have been known in many prokaryotic and viral systems, potential interactions between helicase and primase have not been explored in eukaryotes. Using purified Mcm and DNA primase complexes, a direct physical interaction is detected in pull-down assays between the Mcm2~7 complex and the hetero-dimeric DNA primase composed of the p48 and p58 subunits. The Mcm4/6/7 complex co-sediments with the primase and the DNA polymerase α-primase complex in glycerol gradient centrifugation and forms a Mcm4/6/7-primase-DNA ternary complex in gel-shift assays. Both the Mcm4/6/7 and Mcm2~7 complexes stimulate RNA primer synthesis by DNA primase in vitro. However, primase inhibits the Mcm4/6/7 helicase activity and this inhibition is abolished by the addition of competitor DNA. In contrast, the ATP hydrolysis activity of Mcm4/6/7 complex is not affected by primase. Mcm and primase proteins mutually stimulate their DNA-binding activities. Our findings indicate that a direct physical interaction between primase and Mcm proteins may facilitate priming reaction by the former protein, suggesting that efficient DNA synthesis through helicase-primase interactions may be conserved in eukaryotic chromosomes.
Insights
Eukaryotic DNA replication involves interactions between Mini-chromosome maintenance (Mcm) helicases and DNA primase. These proteins physically interact, with Mcm stimulating primase activity, while primase inhibits Mcm helicase function, suggesting conserved mechanisms for DNA synthesis.
Area of Science:
- Molecular Biology
- Biochemistry
- Genetics
Background:
- Mini-chromosome maintenance (Mcm) proteins are crucial for eukaryotic DNA replication.
- DNA primase synthesizes RNA primers essential for DNA chain elongation.
- Interactions between helicase and primase are known in prokaryotes and viruses but unexplored in eukaryotes.
Purpose of the Study:
- To investigate potential physical and functional interactions between eukaryotic Mcm proteins and DNA primase.
- To elucidate the roles of these interactions in DNA replication.
Main Methods:
- Purified Mcm and DNA primase complexes were used.
- Pull-down assays detected physical interactions.
- Glycerol gradient centrifugation and gel-shift assays analyzed complex formation.
- In vitro assays measured helicase and primase activities.
Main Results:
- A direct physical interaction was observed between the Mcm2~7 complex and DNA primase.
- Mcm complexes (Mcm4/6/7 and Mcm2~7) stimulated primase activity.
- Primase inhibited Mcm4/6/7 helicase activity, but not its ATP hydrolysis.
- Mcm and primase proteins mutually enhanced their DNA-binding activities.
Conclusions:
- A direct physical interaction between eukaryotic primase and Mcm proteins exists.
- This interaction may facilitate primase activity, suggesting conserved helicase-primase interactions in DNA synthesis.
- The findings provide insights into the regulation of DNA replication machinery.
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