Related Experiment Video
Updated: May 8, 2026

Structure and Coordination Determination of Peptide-metal Complexes Using 1D and 2D 1H NMR
Published on: December 16, 2013
Predicting the stability constants of metal-ion complexes from first principles
Ondrej Gutten1, Lubomír Rulíšek
1Institute of Organic Chemistry and Biochemistry, Gilead Sciences Research Center & IOCB, Academy of Sciences of the Czech Republic , Flemingovo nám. 2, 166 10 Praha 6, Czech Republic.
This study calculates metal-ion binding stability constants (β) using computational methods. Theoretical predictions can achieve high accuracy for metal-ion selectivity, complementing experimental measurements.
Area of Science:
- Computational Chemistry
- Biophysical Chemistry
- Thermodynamics
Background:
- The stability constant (β) is crucial for understanding metal-ion binding thermodynamics with ligands and biomolecules.
- Calculating β involves complex free-energy changes due to charged species interactions and solvation effects.
- Traditional thermodynamic cycles require subtracting large energy values, leading to potential inaccuracies.
Purpose of the Study:
- To calculate stability constants (β) for various metal-ion complexes using advanced computational methods.
- To assess the accuracy and limitations of current theoretical protocols for predicting metal-ion binding thermodynamics.
- To propose strategies for improving the accuracy of theoretical stability constant predictions.
Main Methods:
- Density Functional Theory (DFT) and Møller-Plesset second-order perturbation theory (MP2) were employed.
- The conductor-like screening model for realistic solvation (COSMO-RS) was used to account for solvation effects.
- Calculations were performed for complexes involving eight divalent metal ions and various inorganic/organic ligands.
Main Results:
- Relative accuracy of 2-4 kcal·mol⁻¹ (1-3 orders of magnitude in β) was achieved using current computational protocols.
- Systematic metal- and ligand-dependent shifts were identified, affecting absolute accuracy.
- Metal-ion selectivity can be computed with an average accuracy of 2 kcal·mol⁻¹, unaffected by ligand-dependent shifts.
Conclusions:
- Theoretical calculations, with proposed corrections for metal-dependent shifts, can accurately predict metal-ion stability constants.
- Computational methods offer a competitive and complementary approach to experimental measurements in studying metal-ion binding.
- Understanding potential caveats in theoretical predictions is crucial for reliable results.
More Related Videos
11:04Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides
Published on: September 7, 2019
11:38Quantifying the Binding Interactions Between Cu(II) and Peptide Residues in the Presence and Absence of Chromophores
Published on: April 5, 2022
Related Concept Videos
Complexation Equilibria: Factors Influencing Stability of Complexes
Complexation Equilibria: Overview
The equilibrium constant of the complexation reaction is represented as the formation constant...
Formation of Complex Ions
Ladder Diagrams: Complexation Equilibria
The formation constant, K1, for the formation of Cd(NH3)2+ complex from cadmium and ammonia is 3.55 × 102. Log K1 (i.e. pNH3) is 2.55, and...
Complexation Equilibria: The Chelate Effect
Crystal Field Theory - Octahedral Complexes
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...