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Published on: March 20, 2021
Has discovery-based cancer research been a bust?
1Department of Oncology, Clinical Cancer Informatics & Research Centre, The Kinghorn Cancer Centre, Sydney, Australia, repstein@stvincents.com.au.
Abstract:
The completion of the human genome sequence sparked optimism about prospects for new anticancer drug development, but clinical progress over the last decade has proven slower than expected. Here it is proposed that unrealistically high expectations of first-generation discovery-based diagnostics have contributed to this problem. Hypothesis-based single-molecule tests (e.g., mutation screening of KRAS, EGFR, BRAF or KIT genes) continue to change clinical practice incrementally, whereas first-generation multiplex assays--such as gene expression profiling and proteomics--have identified few high-impact therapeutic targets despite numerous correlations with prognosis. To move forward, second-generation multiplex diagnostics should be based not on statistical patterns/associations alone, but on clinically interpretable ('high-signal-to-noise') data such as change-of-function mutations, gene amplifications, recurrent chromosomal anomalies, and abnormal phosphorylation profiles of ERK or mTOR signaling cascades.
Insights
High expectations for first-generation cancer diagnostics led to slow clinical progress. Second-generation diagnostics must focus on high-signal data, not just statistical patterns, for better anticancer drug development.
Area of Science:
- Oncology
- Genomics
- Biomarker Discovery
Background:
- The human genome sequence completion raised hopes for novel anticancer drug development.
- Clinical progress in oncology has been slower than anticipated over the past decade.
Purpose of the Study:
- To analyze the impact of first-generation discovery-based diagnostics on anticancer drug development.
- To propose a framework for more effective second-generation multiplex diagnostics.
Main Methods:
- Review of clinical progress and diagnostic assay performance in oncology.
- Analysis of limitations in first-generation multiplex assays (gene expression profiling, proteomics).
- Identification of key features for second-generation multiplex diagnostics.
Main Results:
- First-generation multiplex assays have yielded limited high-impact therapeutic targets despite prognostic correlations.
- Hypothesis-based single-molecule tests show incremental clinical utility.
- Statistical patterns alone are insufficient for high-impact diagnostic development.
Conclusions:
- Unrealistically high expectations for first-generation diagnostics have hindered progress.
- Second-generation multiplex diagnostics require clinically interpretable, high-signal data.
- Focusing on functional mutations, amplifications, and signaling pathways will advance anticancer drug development.
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