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Spatial Separation of Molecular Conformers and Clusters
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Published on: January 9, 2014

A new module for constrained multi-fragment geometry optimization in internal coordinates implemented in the MOLCAS

Victor P Vysotskiy1, Jonas Boström, Valera Veryazov

  • 1Department of Theoretical Chemistry, Chemical Center, Lund University, P.O. Box 124 S-221 00, Lund, Sweden.

Journal of Computational Chemistry
|September 6, 2013
PubMed
Summary

A new computational method optimizes fragment positions without altering electronic structure. This approach efficiently refines molecular geometries for complex systems using high-level ab initio calculations.

Keywords:
MOLCASconstrained geometry optimizationhigh level ab initio methods

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Area of Science:

  • Computational Chemistry
  • Quantum Chemistry
  • Molecular Modeling

Background:

  • Optimizing relative positions and orientations of molecular fragments is crucial for understanding complex systems.
  • Existing methods can be computationally expensive, especially for high-level electronic structure calculations.

Purpose of the Study:

  • To implement and validate a parallel procedure for efficient geometry optimization of multiple molecular fragments.
  • To develop a method that preserves the electronic structure of individual fragments during optimization.

Main Methods:

  • A constrained fragment geometry optimization approach was implemented in the MOLCAS program package.
  • The method utilizes internal "Z-matrix" coordinates and numerical derivatives for optimization.
  • It handles both independent and covalently bonded fragments, scaling energy evaluations with the number of fragments, not atoms.

Main Results:

  • The procedure demonstrated robust and smooth convergence to optimal structures in test calculations.
  • It successfully applied high-level ab initio methods like CCSD(T) and CASPT2 to complex systems.
  • Calculations on a benzene-lithium complex and an iron porphyrin-oxygen system validated the method's performance.

Conclusions:

  • The developed constrained fragment geometry optimization is an efficient and accurate method for large molecular systems.
  • Its ability to use high-level electronic structure methods makes it valuable for studying complex chemical interactions.