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Related Concept Videos

Hydrogen Bonds01:04

Hydrogen Bonds

A hydrogen bond is formed when a weakly positive hydrogen atom already bonded to one electronegative atom (for example, the oxygen in the water molecule) is attracted to another electronegative atom from another polar molecule, such as water (H2O), hydrogen fluoride (HF), or ammonia (NH3). The huge electronegativity difference between the H atom (2.1) and the atom to which it is bonded (4.0 for an F atom, 3.5 for an O atom, or 3.0 for an N atom), combined with the very small size of an H atom...
Hydrogen Bonds00:26

Hydrogen Bonds

Hydrogen bonds are weak attractions between atoms that have formed other chemical bonds. One of these atoms is electronegative, like oxygen, and has a partial negative charge. The other is a hydrogen atom that has bonded with another electronegative atom and has a partial positive charge.
Hydrogen Bonds Control the World!
Because hydrogen has very weak electronegativity when it binds with a strongly electronegative atom, such as oxygen or nitrogen, electrons in the bond are unequally shared.
Noncovalent Attractions in Biomolecules02:35

Noncovalent Attractions in Biomolecules

Noncovalent attractions are associations within and between molecules that influence the shape and structural stability of complexes. These interactions differ from covalent bonding in that they do not involve sharing of electrons.
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
Noncovalent Attractions in Biomolecules02:35

Noncovalent Attractions in Biomolecules

Noncovalent attractions are associations within and between molecules that influence the shape and structural stability of complexes. These interactions differ from covalent bonding in that they do not involve sharing of electrons.
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
Valence Bond Theory02:45

Valence Bond Theory

Overview of Valence Bond Theory
Valence Bond Theory02:42

Valence Bond Theory

Coordination compounds and complexes exhibit different colors, geometries, and magnetic behavior, depending on the metal atom/ion and ligands from which they are composed. In an attempt to explain the bonding and structure of coordination complexes, Linus Pauling proposed the valence bond theory, or VBT, using the concepts of hybridization and the overlapping of the atomic orbitals. According to VBT, the central metal atom or ion (Lewis acid) hybridizes to provide empty orbitals of suitable...

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Related Experiment Video

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Construction and Systematical Symmetric Studies of a Series of Supramolecular Clusters with Binary or Ternary Ammonium Triphenylacetates
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The quest for self-consistency in hydrogen bond definitions.

Diego Prada-Gracia1, Roman Shevchuk, Francesco Rao

  • 1Freiburg Institute for Advanced Studies, School of Soft Matter Research, Albertstrasse 19, 79104 Freiburg im Breisgau, Germany.

The Journal of Chemical Physics
|September 7, 2013
PubMed
Summary

This study compared common hydrogen-bond definitions in water simulations. Results show weak agreement among definitions and model-specific cutoff needs, highlighting the need for a universal method.

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Area of Science:

  • Computational chemistry
  • Molecular dynamics simulations
  • Physical chemistry

Background:

  • Numerous definitions for hydrogen bonds have been proposed based on classical computer simulations.
  • Validating the self-consistency of these definitions across various conditions is crucial for accurate molecular modeling.

Purpose of the Study:

  • To comparatively study six common hydrogen-bond definitions.
  • To assess their consistency across a range of temperatures (220 K to 400 K) and six classical water models.

Main Methods:

  • Utilized classical computer simulations.
  • Performed comparative analysis of six distinct hydrogen-bond definitions.
  • Investigated behavior across temperatures from 220 K to 400 K.
  • Employed six different classical water models.

Main Results:

  • A generally weak agreement was observed among the hydrogen-bond definitions within the investigated temperature range.
  • The choice of cutoff values for geometrically based definitions is dependent on both temperature and the specific water model used.
  • Significant discrepancies were noted between recently introduced definitions and conventional methods.

Conclusions:

  • The study highlights the lack of a universally applicable method for characterizing hydrogen bonds in classical molecular systems.
  • Developing specific cutoff values for each temperature and water model combination is necessary for accurate analysis.
  • There is a clear need for a more universal and consistent approach to defining hydrogen bonds in simulations.