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Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Pathogenic variants in non-protein-coding sequences
P Makrythanasis1, S E Antonarakis
1Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland.
Clinical Genetics
|September 7, 2013
Summary
Pathogenic genetic variations are not limited to protein-coding genes. This review highlights disease-causing variants in non-protein-coding regions, expanding the scope of the
Area of Science:
- Genomics
- Human Genetics
- Molecular Biology
Background:
- Historically, focus has been on protein-coding genes for genetic disorders.
- Approximately 3000 human protein-coding genes are linked to monogenic disorders.
- The 'Medical Genome' encompasses all functional genomic elements contributing to phenotypes.
Purpose of the Study:
- To review pathogenic variants in non-protein-coding gene regions.
- To broaden the understanding of genetic variation in human disease.
- To emphasize the role of all functional genomic elements in phenotypes.
Main Methods:
- Literature review of pathogenic variants in non-protein-coding regions.
- Analysis of examples linking non-coding variants to Mendelian and complex phenotypes.
- Discussion of evolving sequencing and functional characterization methods.
Main Results:
- Identified examples of pathogenic variants within non-protein-coding gene regions.
- Demonstrated that non-coding variations can cause significant human disorders.
- Highlighted the expanding knowledge base beyond protein-coding genes.
Conclusions:
- Non-protein-coding genomic regions are significant reservoirs of pathogenic variation.
- Advancements in genomic technologies will reveal more disease-associated variants in these regions.
- A comprehensive view of the 'Medical Genome' is crucial for understanding both Mendelian and complex diseases.
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