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Bacterial Artificial Chromosomes: A Functional Genomics Tool for the Study of Positive-strand RNA Viruses
Published on: December 29, 2015
Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010-2011
Begoña Valdazo-González1, Anna Timina, Alexey Scherbakov
1The Pirbright Institute, Ash Road, Pirbright, Surrey GU24 0NF, UK. donald.king@pirbright.ac.uk.
Abstract:
Foot-and-mouth disease virus (FMDV) is a highly contagious and genetically variable virus. Sporadic introductions of this virus into FMD-free countries may cause outbreaks with devastating consequences. In 2010 and 2011, incursions of the FMDV O/SEA/Mya-98 strain, normally restricted to countries in mainland Southeast Asia, caused extensive outbreaks across East Asia. In this study, 12 full genome FMDV sequences for representative samples collected from the People's Republic of China (PR China) including the Hong Kong Special Administrative Region (SAR), the Republic of Korea, the Democratic People's Republic of Korea, Japan, Mongolia and The Russian Federation were generated and compared with additional contemporary sequences from viruses within this lineage. These complete genomes were 8119 to 8193 nucleotides in length and differed at 1181 sites, sharing a nucleotide identity ≥ 91.0% and an amino acid identity ≥ 96.6%. An unexpected deletion of 70 nucleotides within the 5'-untranslated region which resulted in a shorter predicted RNA stem-loop for the S-fragment was revealed in two sequences from PR China and Hong Kong SAR and five additional related samples from the region. Statistical parsimony and Bayesian phylogenetic analysis provide evidence that these outbreaks in East Asia were generated by two independent introductions of the O/SEA/Mya-98 lineage sometime between August 2008 and March 2010. The rapid emergence of these viruses from Southeast Asia highlights the importance of adopting approaches to closely monitor the spread of this lineage that now poses a threat to livestock industries in other regions.
Insights
Foot-and-mouth disease virus (FMDV) outbreaks in East Asia were caused by two independent introductions of the O/SEA/Mya-98 strain. Monitoring this highly contagious virus is crucial for protecting livestock industries.
Area of Science:
- Veterinary Virology
- Molecular Epidemiology
- Disease Outbreak Analysis
Background:
- Foot-and-mouth disease virus (FMDV) is a significant threat due to its high contagiousness and genetic variability.
- Incursions into FMD-free regions can lead to devastating outbreaks, impacting livestock industries.
- The O/SEA/Mya-98 strain, endemic to Southeast Asia, caused major outbreaks in East Asia in 2010-2011.
Purpose of the Study:
- To analyze the genetic characteristics and origins of FMDV O/SEA/Mya-98 strains responsible for East Asian outbreaks.
- To determine the number and timing of introductions of this FMDV lineage into the region.
- To assess the evolutionary dynamics and potential spread of FMDV in East Asia.
Main Methods:
- Generation and sequencing of 12 full-genome FMDV samples from China, Hong Kong SAR, North Korea, South Korea, Japan, Mongolia, and Russia.
- Comparative genomic analysis of generated sequences with contemporary viruses within the O/SEA/Mya-98 lineage.
- Phylogenetic analyses using statistical parsimony and Bayesian methods to infer introduction events and evolutionary relationships.
Main Results:
- Complete genome sequences (8119-8193 nucleotides) showed high nucleotide (≥91.0%) and amino acid (≥96.6%) identity.
- An unusual 70-nucleotide deletion in the 5'-untranslated region was identified in viruses from China and Hong Kong SAR.
- Phylogenetic analyses indicated two independent introductions of the O/SEA/Mya-98 lineage between August 2008 and March 2010.
Conclusions:
- The East Asian outbreaks were initiated by two separate introductions of the FMDV O/SEA/Mya-98 lineage.
- The rapid emergence and spread highlight the need for enhanced surveillance of this FMDV strain.
- Continuous monitoring is essential to mitigate the threat posed by FMDV to regional and global livestock health.
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