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Published on: December 21, 2019
Crystal structure of the TRIM25 B30.2 (PRYSPRY) domain: a key component of antiviral signalling
Akshay A D'Cruz1, Nadia J Kershaw, Jessica J Chiang
1‡Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA, U.S.A.
Abstract:
TRIM (tripartite motif) proteins primarily function as ubiquitin E3 ligases that regulate the innate immune response to infection. TRIM25 [also known as Efp (oestrogen-responsive finger protein)] has been implicated in the regulation of oestrogen receptor α signalling and in the regulation of innate immune signalling via RIG-I (retinoic acid-inducible gene-I). RIG-I senses cytosolic viral RNA and is subsequently ubiquitinated by TRIM25 at its N-terminal CARDs (caspase recruitment domains), leading to type I interferon production. The interaction with RIG-I is dependent on the TRIM25 B30.2 domain, a protein-interaction domain composed of the PRY and SPRY tandem sequence motifs. In the present study we describe the 1.8 Å crystal structure of the TRIM25 B30.2 domain, which exhibits a typical B30.2/SPRY domain fold comprising two N-terminal α-helices, thirteen β-strands arranged into two β-sheets and loop regions of varying lengths. A comparison with other B30.2/SPRY structures and an analysis of the loop regions identified a putative binding pocket, which is likely to be involved in binding target proteins. This was supported by mutagenesis and functional analyses, which identified two key residues (Asp(488) and Trp(621)) in the TRIM25 B30.2 domain as being critical for binding to the RIG-I CARDs.
Insights
The TRIM25 B30.2 domain structure reveals a binding pocket crucial for innate immunity. Key residues Asp488 and Trp621 are essential for TRIM25 to interact with RIG-I CARDs, enabling antiviral responses.
Area of Science:
- Structural Biology
- Immunology
- Molecular Biology
Background:
- Tripartite Motif (TRIM) proteins are E3 ubiquitin ligases regulating innate immunity.
- TRIM25 (Efp) is involved in oestrogen receptor and innate immune signaling via RIG-I.
- TRIM25 ubiquitinates RIG-I CARDs, initiating type I interferon production.
Purpose of the Study:
- Determine the crystal structure of the TRIM25 B30.2 domain.
- Identify the structural basis for TRIM25 interaction with RIG-I.
- Characterize key residues involved in RIG-I binding.
Main Methods:
- X-ray crystallography (1.8 Å resolution) of the TRIM25 B30.2 domain.
- Structural comparison with other B30.2/SPRY domains.
- Mutagenesis and functional assays.
Main Results:
- The TRIM25 B30.2 domain adopts a canonical B30.2/SPRY fold.
- A putative protein-binding pocket was identified within the domain.
- Mutagenesis identified Asp488 and Trp621 as critical for RIG-I CARDs binding.
Conclusions:
- The crystal structure provides insights into TRIM25 B30.2 domain function.
- The identified binding pocket and key residues are essential for RIG-I recognition.
- This structural information aids understanding of TRIM25's role in innate immunity.
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