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Updated: May 7, 2026

Characterizing DNA Repair Processes at Transient and Long-lasting Double-strand DNA Breaks by Immunofluorescence Microscopy
Published on: June 8, 2018
TORC2 signaling pathway guarantees genome stability in the face of DNA strand breaks
Kenji Shimada1, Ireos Filipuzzi, Michael Stahl
1Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland.
Abstract:
A chemicogenetic screen was performed in budding yeast mutants that have a weakened replication stress response. This identified an inhibitor of target of rapamycin (TOR) complexes 1 and 2 that selectively enhances the sensitivity of sgs1Δ cells to hydroxyurea and camptothecin. More importantly, the inhibitor has strong synthetic lethality in combination with either the break-inducing antibiotic Zeocin or ionizing radiation, independent of the strain background. Lethality correlates with a rapid fragmentation of chromosomes that occurs only when TORC2, but not TORC1, is repressed. Genetic inhibition of Tor2 kinase, or its downstream effector kinases Ypk1/Ypk2, conferred similar synergistic effects in the presence of Zeocin. Given that Ypk1/Ypk2 controls the actin cytoskeleton, we tested the effects of actin modulators latrunculin A and jasplakinolide. These phenocopy TORC2 inhibition on Zeocin, although modulation of calcineurin-sensitive transcription does not. These results implicate TORC2-mediated actin filament regulation in the survival of low levels of DNA damage.
Insights
A novel inhibitor targeting the target of rapamycin (TOR) pathway was found to cause synthetic lethality in yeast with DNA damage. This lethality is linked to TORC2-mediated actin regulation, impacting DNA repair and survival.
Area of Science:
- Cell Biology
- Genetics
- Biochemistry
Background:
- Replication stress responses are crucial for maintaining genomic stability.
- Target of Rapamycin (TOR) signaling pathways regulate cell growth and stress responses.
- Understanding DNA damage survival mechanisms is vital for cancer research.
Purpose of the Study:
- To identify novel compounds that sensitize yeast with compromised replication stress response to DNA damaging agents.
- To elucidate the molecular mechanisms underlying synthetic lethality induced by a TOR inhibitor in combination with DNA damaging agents.
- To investigate the role of TORC2 and actin cytoskeleton regulation in DNA damage tolerance.
Main Methods:
- Chemicogenetic screening in budding yeast mutants with impaired replication stress response.
- Assessing sensitivity to DNA damaging agents (hydroxyurea, camptothecin, Zeocin, ionizing radiation).
- Genetic manipulation of TOR pathway components (Tor2, Ypk1/Ypk2) and actin cytoskeleton regulators.
Main Results:
- A TORC1/2 inhibitor was identified that selectively enhances sensitivity to DNA damaging agents in yeast.
- The inhibitor exhibited synthetic lethality with Zeocin or ionizing radiation, causing rapid chromosome fragmentation.
- Lethality was dependent on TORC2 inhibition, not TORC1, and linked to Ypk1/Ypk2 activity and actin cytoskeleton integrity.
- Actin modulators phenocopied TORC2 inhibition effects on DNA damage sensitivity.
Conclusions:
- TORC2 signaling, through Ypk1/Ypk2 and actin regulation, plays a critical role in yeast survival under DNA damaging conditions.
- Targeting TORC2 offers a potential strategy for sensitizing cells to DNA damaging therapies.
- Actin cytoskeleton dynamics are implicated in DNA damage tolerance pathways.
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