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Determining Genetic Expression Profiles in C. elegans Using Microarray and Real-time PCR
Published on: July 30, 2011
Phylogenetic, expression, and functional analyses of anoctamin homologs in Caenorhabditis elegans
Ying Wang1, Tashrique Alam, Katherine Hill-Harfe
1Department of Biology, University of Florida, Gainesville, Florida;
Abstract:
Ca(2+)-activated Cl(-) channels (CaCCs) are critical to processes such as epithelial transport, membrane excitability, and signal transduction. Anoctamin, or TMEM16, is a family of 10 mammalian transmembrane proteins, 2 of which were recently shown to function as CaCCs. The functions of other family members have not been firmly established, and almost nothing is known about anoctamins in invertebrates. Therefore, we performed a phylogenetic analysis of anoctamins across the animal kingdom and examined the expression and function of anoctamins in the genetically tractable nematode Caenorhabditis elegans. Phylogenetic analyses support five anoctamin clades that are at least as old as the deuterostome/protosome ancestor. This includes a branch containing two Drosophila paralogs that group with mammalian ANO1 and ANO2, the two best characterized CaCCs. We identify two anoctamins in C. elegans (ANOH-1 and ANOH-2) that are also present in basal metazoans. The anoh-1 promoter is active in amphid sensory neurons that detect external chemical and nociceptive cues. Within amphid neurons, ANOH-1::GFP fusion protein is enriched within sensory cilia. RNA interference silencing of anoh-1 reduced avoidance of steep osmotic gradients without disrupting amphid cilia development, chemotaxis, or withdrawal from noxious stimuli, suggesting that ANOH-1 functions in a sensory mode-specific manner. The anoh-2 promoter is active in mechanoreceptive neurons and the spermatheca, but loss of anoh-2 had no effect on motility or brood size. Our study indicates that at least five anoctamin duplicates are evolutionarily ancient and suggests that sensory signaling may be a basal function of the anoctamin protein family.
Insights
Calcium-activated chloride channels (CaCCs) are vital proteins. This study reveals ancient evolutionary origins for five anoctamin duplicates, suggesting sensory signaling as a basal function for this protein family.
Area of Science:
- Molecular Biology
- Evolutionary Biology
- Neuroscience
Background:
- Calcium-activated chloride channels (CaCCs) are crucial for various physiological processes.
- The Anoctamin (TMEM16) family comprises 10 mammalian proteins, with only two confirmed as CaCCs.
- Limited knowledge exists regarding anoctamin functions in invertebrates.
Purpose of the Study:
- To conduct a phylogenetic analysis of anoctamins across the animal kingdom.
- To investigate the expression and function of anoctamins in Caenorhabditis elegans.
- To explore the evolutionary history and basal functions of the anoctamin protein family.
Main Methods:
- Phylogenetic analysis of anoctamin sequences across diverse animal species.
- Gene expression analysis using promoter activity in C. elegans.
- Functional studies involving RNA interference (RNAi) to assess gene function.
Main Results:
- Phylogenetic analyses identified five ancient anoctamin clades.
- Two anoctamins, ANOH-1 and ANOH-2, were identified in C. elegans and basal metazoans.
- ANOH-1 functions in osmotic gradient avoidance in sensory neurons, while ANOH-2's role remains unclear.
Conclusions:
- At least five anoctamin duplicates are evolutionarily ancient.
- Sensory signaling is suggested as a basal function for the anoctamin protein family.
- ANOH-1 plays a role in specific sensory modalities in C. elegans.

