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Updated: May 7, 2026

Using Next Generation Sequencing to Identify Mutations Associated with Repair of a CAS9-induced Double Strand Break Near the CD4 Promoter
Published on: March 31, 2022
Modernizing the nonhomologous end-joining repertoire: alternative and classical NHEJ share the stage
Ludovic Deriano1, David B Roth
1Departments of Immunology and Genomes & Genetics, Institut Pasteur, CNRS-URA 1961, 75015 Paris, France;
Abstract:
DNA double-strand breaks (DSBs) are common lesions that continually threaten genomic integrity. Failure to repair a DSB has deleterious consequences, including cell death. Misrepair is also fraught with danger, especially inappropriate end-joining events, which commonly underlie oncogenic transformation and can scramble the genome. Canonically, cells employ two basic mechanisms to repair DSBs: homologous recombination (HR) and the classical nonhomologous end-joining pathway (cNHEJ). More recent experiments identified a highly error-prone NHEJ pathway, termed alternative NHEJ (aNHEJ), which operates in both cNHEJ-proficient and cNHEJ-deficient cells. aNHEJ is now recognized to catalyze many genome rearrangements, some leading to oncogenic transformation. Here, we review the mechanisms of cNHEJ and aNHEJ, their interconnections with the DNA damage response (DDR), and the mechanisms used to determine which of the three DSB repair pathways is used to heal a particular DSB. We briefly review recent clinical applications involving NHEJ and NHEJ inhibitors.
Insights
DNA double-strand breaks (DSBs) threaten genomic integrity. This review details classical nonhomologous end-joining (cNHEJ), alternative NHEJ (aNHEJ), and homologous recombination (HR) pathways, crucial for DNA repair and preventing cancer.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- DNA double-strand breaks (DSBs) are critical DNA lesions impacting genomic stability.
- DSB misrepair, particularly via nonhomologous end-joining (NHEJ), can lead to oncogenic transformation and genome scrambling.
- Canonical repair pathways include homologous recombination (HR) and classical NHEJ (cNHEJ).
Purpose of the Study:
- To review the mechanisms of cNHEJ and alternative NHEJ (aNHEJ) pathways.
- To explore the interplay between these DSB repair pathways and the DNA damage response (DDR).
- To discuss the regulatory mechanisms governing DSB repair pathway choice and clinical applications of NHEJ inhibitors.
Main Methods:
- Literature review of mechanisms governing DSB repair.
- Analysis of the DNA damage response (DDR) pathways.
- Review of clinical applications and inhibitors targeting NHEJ.
Main Results:
- Identified alternative NHEJ (aNHEJ) as a distinct, error-prone pathway operating alongside cNHEJ.
- Highlighted aNHEJ's role in catalyzing genome rearrangements and oncogenic transformation.
- Detailed the DDR's influence on selecting between HR, cNHEJ, and aNHEJ for DSB repair.
Conclusions:
- Understanding cNHEJ and aNHEJ mechanisms is vital for comprehending genome stability and disease.
- The DDR orchestrates the choice of DSB repair pathway, impacting cellular fate.
- Targeting NHEJ pathways offers potential therapeutic strategies for cancer treatment.
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