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Updated: May 7, 2026

Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
Published on: July 8, 2025
Structure-function relationship studies of ammodytoxins and ammodytins by protein engineering
Abstract:
Ammodytoxins (Atxs) and ammodytins (Atns) are group IIA phospholipases A2 (sPLA2s) and their homologues, secreted by venom glands of the nose-horned viper (Vipera a. ammodytes). The molecular mechanisms underlying their various pharmacological effects, including neurotoxicity, myotoxicity and anticoagulant activity, are still not completely understood. The structure-function relationships of Atxs and Atns have been studied by site-directed and cassette mutagenesis. We cloned their complementary DNA reversely transcribed from the mRNA isolated from the venom glands, and expressed the mature protein regions in Escherichia coli. The recombinant proteins were isolated in their inactive forms and renatured in vitro to the properly folded and biologically active forms. More than fifty site-directed mutants and chimeric sPLA2 proteins of Atxs and Atns were produced and their properties analysed. In the course of these studies, the three-dimensional crystal structure was determined of the most neurotoxic venom sPLA2, AtxA, that induces complete failure of vertebrate neuromuscular transmission, using the recombinant protein. The results have contributed significantly to a better understanding of the molecular mechanism of presynaptic toxicity of sPLA2 neurotoxins. In addition, the activity of enzymatically inactive sPLA2 homologues and their evolution are now better understood.
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