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Biochemical and Structural Characterization of the Carbohydrate Transport Substrate-binding-protein SP0092
Published on: October 2, 2017
Physical characterization of the manganese-sensing pneumococcal surface antigen repressor from Streptococcus
John P Lisher1, Khadine A Higgins, Michael J Maroney
1Department of Chemistry and ‡Interdisciplinary Graduate Program in Biochemistry, Indiana University , Bloomington, Indiana 47405-7102, United States.
Abstract:
Transition metals, including manganese, are required for the proper virulence and persistence of many pathogenic bacteria. In Streptococcus pneumoniae (Spn), manganese homeostasis is controlled by a high-affinity Mn(II) uptake complex, PsaBCA, and a constitutively expressed efflux transporter, MntE. psaBCA expression is transcriptionally regulated by the DtxR/MntR family metalloregulatory protein pneumococcal surface antigen repressor (PsaR) in Spn. Here, we present a comprehensive analysis of the metal and DNA binding properties of PsaR. PsaR is a homodimer in the absence and presence of metals and binds two manganese or zinc atoms per protomer (four per dimer) in two pairs of structurally distinct sites, termed site 1 and site 2. Site 1 is likely filled with Zn(II) in vivo (K(Zn1) ≥ 10¹³ M⁻¹; K(Mn1) ≈ 10⁸ M⁻¹). The Zn(II)-site 1 complex adopts a pentacoordinate geometry as determined by X-ray absorption spectroscopy containing a single cysteine and appears to be analogous to the Cd(II) site observed in Streptococcus gordonii ScaR. Site 1 is necessary but not sufficient for full positive allosteric activation of DNA operator binding by metals as measured by ΔGc, the allosteric coupling free energy, because site 1 mutants show an intermediate ΔGc. Site 2 is the primary regulatory site and governs specificity for Mn(II) over Zn(II) in PsaR, where ΔGc(Zn,Mn) >> ΔGc(Zn,Zn) despite the fact that Zn(II) binds site 2 with an affinity 40-fold higher than that of Mn(II); i.e., K(Zn2) > K(Mn2). Mutational studies reveal that Asp7 in site 2 is a critical ligand for Mn(II)-dependent allosteric activation of DNA binding. These findings are discussed in the context of other well-studied DtxR/MntR Mn(II)/Fe(II) metallorepressors.
Insights
The pneumococcal surface antigen repressor (PsaR) protein binds manganese and zinc in distinct sites, regulating bacterial virulence. Site 2 is crucial for manganese-specific DNA binding activation, essential for pathogenic bacteria survival.
Area of Science:
- Microbiology and Molecular Biology
- Bacterial Pathogenesis
- Protein-Metal Interactions
Background:
- Transition metals like manganese are vital for pathogenic bacteria, influencing virulence and persistence.
- In Streptococcus pneumoniae (Spn), manganese homeostasis involves the PsaBCA uptake complex and MntE efflux transporter.
- PsaR, a metalloregulatory protein, controls the expression of psaBCA, impacting manganese uptake.
Purpose of the Study:
- To comprehensively analyze the metal and DNA binding properties of the PsaR protein.
- To elucidate the roles of distinct metal-binding sites in PsaR's regulatory function.
- To understand the mechanism of PsaR's allosteric activation of DNA operator binding.
Main Methods:
- Biophysical characterization of PsaR's metal and DNA binding properties.
- X-ray absorption spectroscopy to determine metal-ligand coordination.
- Mutational studies to identify critical residues for metal-dependent regulation.
Main Results:
- PsaR functions as a homodimer, binding two metal ions (Mn(II) or Zn(II)) per protomer at two distinct sites (Site 1 and Site 2).
- Site 1, likely occupied by Zn(II) in vivo, is necessary but insufficient for full allosteric activation of DNA binding.
- Site 2 is the primary regulatory site, conferring Mn(II) specificity; Asp7 is critical for Mn(II)-dependent activation of DNA binding.
Conclusions:
- PsaR's metal-binding sites exhibit differential affinities and roles in regulating gene expression.
- The study reveals a detailed mechanism for manganese-specific allosteric activation of DNA binding by PsaR.
- Findings contribute to understanding metalloregulation in DtxR/MntR family proteins and bacterial metal homeostasis.
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