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Updated: May 7, 2026

Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms
Published on: December 9, 2015
Use of collateral sensitivity networks to design drug cycling protocols that avoid resistance development
Lejla Imamovic1, Morten O A Sommer
1Department of Systems Biology, Technical University of Denmark, DK-2800 Lyngby, Denmark.
Abstract:
New drug deployment strategies are imperative to address the problem of drug resistance, which is limiting the management of infectious diseases and cancers. We evolved resistance in Escherichia coli toward 23 drugs used clinically for treating bacterial infections and mapped the resulting collateral sensitivity and resistance profiles, revealing a complex collateral sensitivity network. On the basis of these data, we propose a new treatment framework--collateral sensitivity cycling--in which drugs with compatible collateral sensitivity profiles are used sequentially to treat infection and select against drug resistance development. We identified hundreds of such drug sets and demonstrated that the antibiotics gentamicin and cefuroxime can be deployed cyclically such that the treatment regimen selected against resistance to either drug. We then validated our findings with related bacterial pathogens. These results provide proof of principle for collateral sensitivity cycling as a sustainable treatment paradigm that may be generally applicable to infectious diseases and cancer.
Insights
Drug resistance is a major challenge. This study introduces collateral sensitivity cycling, a new sequential drug treatment strategy that combats resistance in bacterial infections and potentially cancer.
Area of Science:
- Microbiology and Infectious Diseases
- Pharmacology and Drug Resistance
- Computational Biology and Network Analysis
Background:
- Drug resistance poses a significant threat to managing infectious diseases and cancers.
- Existing treatment strategies are insufficient to overcome the growing problem of antimicrobial and anticancer drug resistance.
- Novel therapeutic approaches are urgently needed to combat resistance and improve patient outcomes.
Purpose of the Study:
- To investigate collateral sensitivity and resistance profiles following drug exposure in Escherichia coli.
- To develop a new treatment framework, collateral sensitivity cycling, to combat drug resistance.
- To validate the efficacy of collateral sensitivity cycling in bacterial pathogens.
Main Methods:
- Evolved drug resistance in Escherichia coli against 23 clinical drugs.
- Mapped collateral sensitivity and resistance profiles to construct a complex network.
- Identified and tested sequential drug combinations for collateral sensitivity cycling.
Main Results:
- Discovered a complex collateral sensitivity network among drugs.
- Identified hundreds of drug sets suitable for collateral sensitivity cycling.
- Demonstrated that cyclic deployment of gentamicin and cefuroxime selects against resistance in pathogens.
Conclusions:
- Collateral sensitivity cycling is a viable treatment paradigm for combating drug resistance.
- This strategy shows potential for sustainable application in treating infectious diseases and cancers.
- Findings provide proof of principle for a novel approach to overcome drug resistance.
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