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Updated: May 7, 2026

Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
Histone deacetylase inhibitors induce apoptosis in myeloid leukemia by suppressing autophagy
M V Stankov1, M El Khatib2, B Kumar Thakur2
1Department of Clinical Immunology and Rheumatology, Hannover Medical School, Hannover, Germany.
Abstract:
Histone deacetylase (HDAC) inhibitors (HDACis) are well-characterized anti-cancer agents with promising results in clinical trials. However, mechanistically little is known regarding their selectivity in killing malignant cells while sparing normal cells. Gene expression-based chemical genomics identified HDACis as being particularly potent against Down syndrome-associated myeloid leukemia (DS-AMKL) blasts. Investigating the antileukemic function of HDACis revealed their transcriptional and post-translational regulation of key autophagic proteins, including ATG7. This leads to suppression of autophagy, a lysosomal degradation process that can protect cells against damaged or unnecessary organelles and protein aggregates. DS-AMKL cells exhibit low baseline autophagy due to mammalian target of rapamycin (mTOR) activation. Consequently, HDAC inhibition repressed autophagy below a critical threshold, which resulted in accumulation of mitochondria, production of reactive oxygen species, DNA damage and apoptosis. Those HDACi-mediated effects could be reverted upon autophagy activation or aggravated upon further pharmacological or genetic inhibition. Our findings were further extended to other major acute myeloid leukemia subgroups with low basal level autophagy. The constitutive suppression of autophagy due to mTOR activation represents an inherent difference between cancer and normal cells. Thus, via autophagy suppression, HDACis deprive cells of an essential pro-survival mechanism, which translates into an attractive strategy to specifically target cancer cells.
Insights
Histone deacetylase inhibitors selectively kill leukemia cells by suppressing autophagy, a crucial survival process. This mechanism exploits cancer cells' inherent low autophagy, offering a targeted anti-cancer strategy.
Area of Science:
- Oncology
- Molecular Biology
- Cellular Biology
Background:
- Histone deacetylase inhibitors (HDACis) are established anti-cancer agents.
- The precise mechanism of HDACi selectivity against malignant versus normal cells remains unclear.
- Gene expression analysis identified HDACis as potent against Down syndrome-associated myeloid leukemia (DS-AMKL).
Purpose of the Study:
- To investigate the antileukemic mechanisms of HDAC inhibitors.
- To elucidate the role of autophagy in HDACi-mediated cancer cell killing.
- To explore the potential of targeting autophagy for cancer therapy.
Main Methods:
- Gene expression-based chemical genomics screening.
- Analysis of autophagy-related protein regulation (e.g., ATG7) by HDACis.
- Assessment of cellular responses to HDAC inhibition, including mitochondrial accumulation, reactive oxygen species production, DNA damage, and apoptosis.
Main Results:
- HDAC inhibitors suppress autophagy by regulating key autophagic proteins like ATG7.
- DS-AMKL cells exhibit low baseline autophagy due to mammalian target of rapamycin (mTOR) activation.
- HDAC inhibition further reduces autophagy below a critical threshold, inducing apoptosis.
- These effects are reversible with autophagy activation and exacerbated by further inhibition.
- The findings extend to other acute myeloid leukemia subgroups with low basal autophagy.
Conclusions:
- Constitutive suppression of autophagy via mTOR activation is an inherent difference between cancer and normal cells.
- HDAC inhibitors exploit this difference by suppressing autophagy, thereby eliminating a pro-survival mechanism in cancer cells.
- This represents a promising strategy for the selective targeting of cancer cells.
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