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Updated: May 7, 2026

Rapid PCR Thermocycling using Microscale Thermal Convection
Published on: March 5, 2011
Microscale chaotic advection enables robust convective DNA replication
Aashish Priye1, Yassin A Hassan, Victor M Ugaz
1Artie McFerrin Department of Chemical Engineering, ‡Department of Mechanical Engineering, and §Department of Nuclear Engineering, Texas A&M University , College Station, Texas 77843-3122, United States.
Abstract:
The ability of chaotic advection under microscale confinement to direct chemical processes along accelerated kinetic pathways has been recognized for some time. However, practical applications have been slow to emerge because optimal results are often counterintuitively achieved in flows that appear to possess undesirably high disorder. Here we present a 3D time-resolved analysis of polymerase chain reaction (PCR)-mediated DNA replication across a broad ensemble of geometric states. The resulting parametric map reveals an unexpectedly wide operating regime where reaction rates remain constant over 2 orders of magnitude of the Rayleigh number, encompassing virtually any realistic PCR condition (temperature, volume, gravitational alignment), a level of robustness previously thought unattainable in the convective format.
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