Related Experiment Video
Updated: May 7, 2026

Cryo-Structured Illumination Microscopic Data Collection from Cryogenically Preserved Cells
Published on: May 28, 2021
KOTOBUKI-1 apparatus for cryogenic coherent X-ray diffraction imaging.
Masayoshi Nakasako1, Yuki Takayama, Tomotaka Oroguchi
1Department of Physics, Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan.
We developed KOTOBUKI-1, an apparatus for cryogenic coherent X-ray diffraction imaging of frozen-hydrated particles. It enables stable, long-exposure data collection at 66 K for micron-sized samples.
Area of Science:
- Materials Science
- Biological Sciences
- X-ray Imaging
Background:
- Coherent X-ray diffraction imaging (CXDI) requires stable cryogenic conditions for frozen-hydrated specimens.
- Maintaining low temperatures and minimizing specimen movement are critical for high-resolution imaging.
Purpose of the Study:
- To develop an experimental apparatus for CXDI of frozen-hydrated non-crystalline particles at cryogenic temperatures.
- To enable stable, long-exposure data collection with minimal positional fluctuation.
Main Methods:
- Development of the KOTOBUKI-1 apparatus featuring a liquid nitrogen-cooled cryogenic pot.
- Implementation of a loading device for transferring specimens from liquid nitrogen to a vacuum specimen stage.
- Utilizing evaporation cooling for liquid nitrogen to achieve stable cryogenic temperatures.
Main Results:
- Achieved diffraction data collection for frozen-hydrated specimens at 66 K with positional fluctuation below 0.4 μm.
- Demonstrated the apparatus's capability for collecting data from micron-sized non-crystalline particles (e.g., metal colloid, chloroplast).
- Successfully applied the apparatus for single-shot diffraction data collection of sub-micron particles using X-ray free electron lasers.
Conclusions:
- The KOTOBUKI-1 apparatus provides a stable cryogenic environment for CXDI of frozen-hydrated samples.
- It facilitates easy specimen exchange from liquid nitrogen storage to the experimental stage.
- The system is effective for analyzing both micron- and sub-micron sized non-crystalline particles from diverse scientific fields.
More Related Videos
Related Concept Videos
Cryo-electron Microscopy
X-ray Imaging
X-ray Diffraction of Biological Samples
According to Bragg's law, when X-rays strike the sample positioned on a stage, the rays are scattered by the electron clouds around the sample atoms. The X-ray diffraction or scattering is caused by constructive interference of the X-ray waves that reflect off the internal crystal...
Atomic Force Microscopy
The AFM Probe
The probe is regarded as the heart of any AFM setup and comprises the...
X-ray Crystallography
Diffraction
Diffraction is the change in the direction of travel experienced by an electromagnetic wave when it encounters a physical barrier whose dimensions are comparable to those of the wavelength of the light. X-rays are electromagnetic radiation with wavelengths about as long as the distance between neighboring...
Atomic Absorption Spectroscopy: Instrumentation
The atomizer used in AAS can be either a flame atomizer or an...
