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Updated: May 7, 2026

Purification of Viral DNA for the Identification of Associated Viral and Cellular Proteins
Published on: August 31, 2017
Herpes simplex virus type 1 single strand DNA binding protein and helicase/primase complex disable cellular ATR
Kareem N Mohni1, Samantha Smith, Alexander R Dee
1Department of Molecular, Microbial and Structural Biology and the Molecular Biology and Biochemistry Graduate Program, University of Connecticut Health Center, Farmington, Connecticut, United States of America.
Insights
Herpes Simplex Virus type 1 (HSV-1) disables the cell's ATR DNA damage response. Viral proteins ICP8 and helicase/primase block the 9-1-1 clamp, preventing ATR activation and cell signaling.
Area of Science:
- Virology
- Molecular Biology
- Cellular Biology
Background:
- Herpes Simplex Virus type 1 (HSV-1) infection interferes with cellular DNA damage response pathways.
- HSV-1-infected cells exhibit impaired Chk1 phosphorylation, a key event in ATR signaling, even when replication forks stall.
Purpose of the Study:
- To elucidate the mechanism by which HSV-1 disables the ATR DNA damage response kinase.
- To identify the specific viral proteins involved in inhibiting ATR signaling.
Main Methods:
- Utilized transfected cells to study the interaction of HSV-1 proteins with cellular DNA damage response machinery.
- Investigated the localization and complex formation of viral proteins (ICP8, UL8/UL5/UL52) at sites of DNA damage.
- Assessed the recruitment of ATR/ATRIP, RPA, and the 9-1-1 checkpoint clamp in the presence of viral proteins.
Main Results:
- The HSV-1 single-stranded DNA binding protein (ICP8) and the helicase/primase complex (UL8/UL5/UL52) form a nuclear complex that disables ATR signaling.
- This viral complex localizes to DNA damage sites and interacts with ATR/ATRIP and RPA but excludes the 9-1-1 checkpoint clamp.
- The viral proteins are proposed to bind the DNA substrate, preventing 9-1-1 clamp loading and subsequent recruitment of TopBP1, the ATR activator.
Conclusions:
- HSV-1 viral proteins ICP8 and helicase/primase directly inhibit ATR signaling by obstructing the DNA damage recognition site.
- This mechanism prevents the loading of the 9-1-1 checkpoint clamp and TopBP1, effectively disabling the ATR-mediated DNA damage response.
- This represents a novel strategy where viral replication proteins interfere with host DNA damage signaling pathways, offering potential therapeutic targets.
Abstract:
Herpes Simplex Virus type 1 (HSV-1) has evolved to disable the cellular DNA damage response kinase, ATR. We have previously shown that HSV-1-infected cells are unable to phosphorylate the ATR substrate Chk1, even under conditions in which replication forks are stalled. Here we report that the HSV-1 single stranded DNA binding protein (ICP8), and the helicase/primase complex (UL8/UL5/UL52) form a nuclear complex in transfected cells that is necessary and sufficient to disable ATR signaling. This complex localizes to sites of DNA damage and colocalizes with ATR/ATRIP and RPA, but under these conditions, the Rad9-Rad1-Hus1 checkpoint clamp (9-1-1) do not. ATR is generally activated by substrates that contain ssDNA adjacent to dsDNA, and previous work from our laboratory has shown that ICP8 and helicase/primase also recognize this substrate. We suggest that these four viral proteins prevent ATR activation by binding to the DNA substrate and obstructing loading of the 9-1-1 checkpoint clamp. Exclusion of 9-1-1 prevents recruitment of TopBP1, the ATR kinase activator, and thus effectively disables ATR signaling. These data provide the first example of viral DNA replication proteins obscuring access to a DNA substrate that would normally trigger a DNA damage response and checkpoint signaling. This unusual mechanism used by HSV suggests that it may be possible to inhibit ATR signaling by preventing recruitment of the 9-1-1 clamp and TopBP1.
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