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Preparation and In Vivo Use of an Activity-based Probe for N-acylethanolamine Acid Amidase
Published on: November 23, 2016
2-(Benzyl-carbamo-yl)nicotinic acid
Yan-Cao Mao1, Hao Wu, Jin-Jun Shan
1College of Pharmacy, Nanjing University of Chinese Medicine, Nanjing 210023, People's Republic of China ; Department of Applied Chemistry, Nanjing College of Chemical Technology, Nanjing 210048, People's Republic of China.
This study details the molecular structure of a novel organic compound, C14H12N2O3. It reveals specific twists between its aromatic rings and the formation of intermolecular hydrogen bonds in its crystal structure.
Area of Science:
- Crystallography
- Organic Chemistry
- Supramolecular Chemistry
Background:
- Understanding the three-dimensional arrangement of atoms in organic molecules is crucial for predicting their properties and reactivity.
- Crystal engineering relies on characterizing intermolecular interactions to design novel materials with desired functions.
Purpose of the Study:
- To elucidate the crystal structure and intermolecular interactions of the title compound, C14H12N2O3.
- To analyze the conformational preferences and hydrogen bonding patterns within the molecule and its crystal lattice.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the precise atomic coordinates and bond lengths/angles.
- Analysis of crystallographic data was performed to identify and quantify dihedral angles and hydrogen bond geometries.
Main Results:
- The pyridine and phenyl rings exhibit significant twists relative to each other and the carboxylic acid group, with dihedral angles of 37.1(5)° and 8.1(3)°, respectively.
- The phenyl ring forms a 41.4(1)° dihedral angle with the C-NH-C=O fragment, indicating a non-planar conformation.
- An intramolecular hydrogen bond was observed between the carboxylic acid and carbonyl groups (O-H⋯O).
- Intermolecular N-H⋯O hydrogen bonds link molecules into a supramolecular chain along the crystallographic a-axis.
Conclusions:
- The title compound displays a complex three-dimensional structure driven by intramolecular hydrogen bonding and specific torsional angles.
- The observed supramolecular arrangement highlights the role of intermolecular N-H⋯O hydrogen bonds in crystal packing and material properties.
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