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Updated: May 7, 2026

Author Spotlight: Advancements in Understanding and Combatting Shigella Infections
Published on: February 9, 2024
Evolution of a self-inducible cytolethal distending toxin type V-encoding bacteriophage from Escherichia coli O157:H7
Anna Allué-Guardia1, Lejla Imamovic, Maite Muniesa
1Department of Microbiology, University of Barcelona, Barcelona, Spain.
Abstract:
Some cdt genes are located within the genome of inducible or cryptic bacteriophages, but there is little information about the mechanisms of cdt transfer because of the reduced number of inducible Cdt phages described. In this study, a new self-inducible Myoviridae Cdt phage (ΦAA91) was isolated from a nonclinical O157:H7 Shiga toxin-producing Escherichia coli strain and was used to lysogenize a cdt-negative strain of Shigella sonnei. We found that the phage induced from S. sonnei (ΦAA91-ss) was not identical to the original phage. ΦAA91-ss was used to infect a collection of 57 bacterial strains, was infectious in 59.6% of the strains, and was able to lysogenize 22.8% of them. The complete sequence of ΦAA91-ss showed a 33,628-bp genome with characteristics of a P2-like phage with the cdt operon located near the cosR site. We found an IS21 element composed of two open reading frames inserted within the cox gene of the phage, causing gene truncation. Truncation of cox does not affect lytic induction but could contribute to phage recombination and generation of lysogens. The IS21 element was not present in the ΦAA91 phage from E. coli, but it was incorporated into the phage genome after its transduction in Shigella. This study shows empirically the evolution of temperate bacteriophages carrying virulence genes after infecting a new host and the generation of a phage population with better lysogenic abilities that would ultimately lead to the emergence of new pathogenic strains.
Insights
Researchers discovered a new bacteriophage, ΦAA91, carrying Shiga toxin genes. This phage evolved in Shigella sonnei, gaining enhanced lysogenic abilities and potentially contributing to new pathogenic strains.
Area of Science:
- Microbiology
- Virology
- Genetics
Background:
- Bacteriophages carrying virulence genes, likecdt genes, play a role in bacterial pathogenicity.
- Limited understanding exists regarding the transfer mechanisms of these genes due to a scarcity of described inducible Cdt phages.
Purpose of the Study:
- To investigate the mechanisms of cdt gene transfer mediated by bacteriophages.
- To characterize a novel self-inducible Cdt phage and its evolution after host transfer.
Main Methods:
- Isolation and characterization of a novel Myoviridae Cdt phage (ΦAA91) from Escherichia coli.
- Lysogenization of a cdt-negative Shigella sonnei strain with ΦAA91 to generate ΦAA91-ss.
- Genome sequencing of ΦAA91-ss and analysis of genetic elements, including an IS21 insertion.
- Infection and lysogenization assays of ΦAA91-ss across a collection of bacterial strains.
Main Results:
- A new self-inducible Cdt phage, ΦAA91, was isolated and its derivative, ΦAA91-ss, was generated in Shigella sonnei.
- ΦAA91-ss demonstrated broad infectivity (59.6%) and lysogenization capability (22.8%) in diverse bacterial strains.
- Genome sequencing revealed ΦAA91-ss has a P2-like structure with the cdt operon near cosR and an IS21 insertion truncating the cox gene.
- The IS21 element, absent in the original phage, was acquired after transduction in Shigella, enhancing lysogenic potential.
Conclusions:
- Temperate bacteriophages carrying virulence genes can evolve upon infecting new hosts, acquiring enhanced lysogenic abilities.
- The observed evolution of ΦAA91-ss in Shigella sonnei provides empirical evidence for the emergence of new pathogenic strains through phage-mediated gene transfer.
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