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Related Concept Videos

Viral Structure00:56

Viral Structure

59.4K
Viruses are extraordinarily diverse in shape and size, but they all have several structural features in common. All viruses have a core that contains a DNA- or RNA-based genome. The core is surrounded by a protective coat of proteins called the capsid. The capsid is composed of subunits called capsomeres. The capsid and genome-containing core are together known as the nucleocapsid.
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Coat Assembly and GTPases01:33

Coat Assembly and GTPases

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Vesicles incorporate different coat protein subunits in different cell locations, which changes the properties of the coat, such as the shape and geometry of the transport vesicles. Thus, vesicle coat proteins also play a significant role in cargo selection.
Coat assembly depends on the local availability of phosphatidylinositol phosphates or PIPs and GTP-binding proteins. Adaptor proteins, which link the coat proteins to the membrane, bind to these PIPs and play a crucial role in controlling...
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Pinching-off of Coated Vesicles01:32

Pinching-off of Coated Vesicles

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Vesicle budding is orchestrated by distinct cytosolic proteins such as adaptor proteins, coat proteins, and GTPases. To initiate vesicle budding, membrane-bending proteins containing crescent-shaped BAR domains bind to the lipid heads in the bilayer and distort the membrane to form a protein-coated vesicle bud. Adaptors proteins such as AP2 for clathrin-coated vesicles can nucleate on the deformed membrane. Finally, coat proteins such as clathrin or COPI and COPII assemble into a coat forming...
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Size and Structure of Viral Genomes01:26

Size and Structure of Viral Genomes

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Viral genomes exhibit remarkable diversity in size, structure, and composition, influencing their replication strategies and interactions with host cells. These genomes consist of either DNA or RNA and may be linear or circular. Additionally, they can be single-stranded or double-stranded, with each configuration affecting how the virus propagates within a host. RNA viruses, for instance, generally have smaller genomes than DNA viruses, a factor that contributes to their high mutation rates and...
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Retrovirus Life Cycles01:10

Retrovirus Life Cycles

43.1K
Retroviruses have a single-stranded RNA genome that undergoes a special form of replication. Once the retrovirus has entered the host cell, an enzyme called reverse transcriptase synthesizes double-stranded DNA from the retroviral RNA genome. This DNA copy of the genome is then integrated into the host’s genome inside the nucleus via an enzyme called integrase. Consequently, the retroviral genome is transcribed into RNA whenever the host’s genome is transcribed, allowing the...
43.1K
Viruses with RNA Genomes01:29

Viruses with RNA Genomes

1.5K
RNA viruses are categorized into positive-strand, negative-strand, or double-stranded groups based on their genomic structure and replication mechanisms. This classification dictates how they exploit host cellular machinery for protein synthesis and replication. Some RNA viruses also utilize reverse transcription as part of their life cycle, further diversifying their replication strategies.Positive-Strand RNA VirusesPositive-strand RNA viruses have genomes that function directly as messenger...
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Related Experiment Video

Updated: May 7, 2026

Generation and Assembly of Virus-Specific Nucleocapsids of the Respiratory Syncytial Virus
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Generation and Assembly of Virus-Specific Nucleocapsids of the Respiratory Syncytial Virus

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Nonicosahedral pathways for capsid expansion.

Paolo Cermelli1, Giuliana Indelicato, Reidun Twarock

  • 1Dipartimento di Matematica, Università di Torino, Torino, Italy.

Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics
|October 16, 2013
PubMed
Summary

Viral structural transitions are key to infection. Our coarse-grained model reveals these capsid expansions occur via a wavelike cascade of local events, clarifying viral instability mechanisms.

Area of Science:

  • Structural biology
  • Virology
  • Computational biophysics

Background:

  • Viral structural transitions are crucial for infectivity.
  • The precise mechanisms and pathways of viral capsid expansion remain incompletely understood.
  • Characterizing these processes is vital for understanding viral life cycles.

Purpose of the Study:

  • To develop a coarse-grained model for viral capsid expansion.
  • To investigate the conditions leading to viral capsid instability.
  • To elucidate the mechanism of structural transitions in viral capsids.

Main Methods:

  • Development of a coarse-grained computational model.
  • Simulation of viral capsid expansion pathways.
  • Analysis of structural transitions under varying conditions.

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Structure of HIV-1 Capsid Assemblies by Cryo-electron Microscopy and Iterative Helical Real-space Reconstruction
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Structure of HIV-1 Capsid Assemblies by Cryo-electron Microscopy and Iterative Helical Real-space Reconstruction

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Use of Viral Entry Assays and Molecular Docking Analysis for the Identification of Antiviral Candidates against Coxsackievirus A16
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Use of Viral Entry Assays and Molecular Docking Analysis for the Identification of Antiviral Candidates against Coxsackievirus A16

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Structure of HIV-1 Capsid Assemblies by Cryo-electron Microscopy and Iterative Helical Real-space Reconstruction
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Use of Viral Entry Assays and Molecular Docking Analysis for the Identification of Antiviral Candidates against Coxsackievirus A16
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Main Results:

  • The model captures essential features of viral capsid expansion.
  • Identified conditions that lead to capsid instability.
  • Demonstrated that icosahedral viral capsids expand via a low-symmetry cascade of local events.
  • Observed a wavelike propagation of expansion over the capsid surface.

Conclusions:

  • The proposed model provides insights into viral structural transitions.
  • Capsid instability is linked to specific expansion pathways.
  • Wavelike cascades of local expansions are a likely mechanism for viral capsid structural transitions.