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Updated: May 7, 2026

Studying DNA Looping by Single-Molecule FRET
Published on: June 28, 2014
Critical bending torque of DNA is a materials parameter independent of local base sequence
Juan Wang1, Hao Qu, Giovanni Zocchi
1Department of Physics and Astronomy, University of California Los Angeles, Los Angeles, CA 90095-1547, USA.
Abstract:
Short double-stranded DNA molecules exhibit a softening transition under large bending which is quantitatively described by a critical bending torque τ_{c} at which the molecule develops a kink. Through equilibrium measurements of the elastic energy of short (∼10 nm), highly stressed DNA molecules with a nick at the center we determine τ_{c} for different sequences around the nick. We find that τ_{c} is a robust materials parameter essentially independent of sequence. The measurements also show that, at least for nicked DNA, the local structure at the origin of the softening transition is not a single-stranded "bubble."
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