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Detection of Targetable Alterations in Non-small Cell Lung Cancer using Next-generation Sequencing
Published on: October 10, 2025
Targeting the epigenome in lung cancer: expanding approaches to epigenetic therapy
Marko Jakopovic1, Anish Thomas, Sanjeeve Balasubramaniam
1University of Zagreb, School of Medicine, Department for Respiratory Diseases Jordanovac, University Hospital Center Zagreb , Zagreb , Croatia.
Abstract:
Epigenetic aberrations offer dynamic and reversible targets for cancer therapy; increasingly, alteration via overexpression, mutation, or rearrangement is found in genes that control the epigenome. Such alterations suggest a fundamental role in carcinogenesis. Here, we consider three epigenetic mechanisms: DNA methylation, histone tail modification and non-coding, microRNA regulation. Evidence for each of these in lung cancer origin or progression has been gathered, along with evidence that epigenetic alterations might be useful in early detection. DNA hypermethylation of tumor suppressor promoters has been observed, along with global hypomethylation and hypoacetylation, suggesting an important role for tumor suppressor gene silencing. These features have been linked as prognostic markers with poor outcome in lung cancer. Several lines of evidence have also suggested a role for miRNA in carcinogenesis and in outcome. Cigarette smoke downregulates miR-487b, which targets both RAS and MYC; RAS is also a target of miR-let-7, again downregulated in lung cancer. Together the evidence implicates epigenetic aberration in lung cancer and suggests that targeting these aberrations should be carefully explored. To date, DNA methyltransferase and histone deacetylase inhibitors have had minimal clinical activity. Explanations include the possibility that the agents are not sufficiently potent to invoke epigenetic reversion to a more normal state; that insufficient time elapses in most clinical trials to observe true epigenetic reversion; and that doses often used may provoke off-target effects such as DNA damage that prevent epigenetic reversion. Combinations of epigenetic therapies may address those problems. When epigenetic agents are used in combination with chemotherapy or targeted therapy it is hoped that downstream biological effects will provoke synergistic cytotoxicity. This review evaluates the challenges of exploiting the epigenome in the treatment of lung cancer.
Insights
Epigenetic aberrations like DNA methylation and microRNA dysregulation are key in lung cancer development and progression. Targeting these epigenetic changes, alongside other therapies, holds promise for improved lung cancer treatment and early detection.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- Epigenetic mechanisms, including DNA methylation, histone modification, and microRNA regulation, are increasingly implicated in cancer.
- Alterations in these epigenetic regulators are frequently observed in lung cancer, suggesting a critical role in its origin and progression.
Purpose of the Study:
- To review the evidence linking epigenetic aberrations to lung cancer.
- To explore the potential of epigenetic alterations as biomarkers for early detection and prognosis.
- To evaluate the challenges and potential of targeting epigenetic mechanisms in lung cancer therapy.
Main Methods:
- Review of existing literature on epigenetic mechanisms in lung cancer.
- Analysis of studies investigating DNA methylation, histone modifications, and microRNA in lung cancer.
- Evaluation of clinical trial data for epigenetic therapies in lung cancer.
Main Results:
- DNA hypermethylation of tumor suppressor genes and global hypomethylation are observed in lung cancer, correlating with poor prognosis.
- MicroRNA dysregulation, such as downregulation of miR-487b and miR-let-7, is linked to lung carcinogenesis and outcome.
- Current epigenetic therapies (DNA methyltransferase and histone deacetylase inhibitors) show limited clinical activity, possibly due to insufficient potency, short trial durations, or off-target effects.
Conclusions:
- Epigenetic aberrations are fundamentally involved in lung cancer and represent promising therapeutic targets.
- Combinatorial approaches involving epigenetic agents with chemotherapy or targeted therapy may overcome current limitations and enhance efficacy.
- Further research is needed to optimize epigenetic therapies for effective lung cancer treatment.
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