Assembled topographic antigenic determinants of pigeon cytochrome c

The specificity of the IgG fraction of the sera of several rabbits hyperimmunized with glutaraldehyde-polymerized pigeon cytochrome c was examined by fluorescence-quenching titration and a sensitive competitive plate-binding radioimmunoassay developed for the analysis of small amounts of antiserum. Four pigeon cytochrome c-specific Fab fragments were found to bind simultaneously to the immunogen. Competition assays, using an extensive set of naturally occurring, chemically prepared hybrid and enzymically modified cytochromes c, implicated in antibody binding all seven amino acid residues at which the immunogen differs from the homologous rabbit cytochrome c. Thus, rabbits produce small amounts of three antibody populations directed against the regions of serine 15, alanine 44, and glycine 89, respectively, on pigeon cytochrome c, and a large amount of the population which binds to an assembled topographic determinant composed of isoleucine 3, glutamine 100, alanine 103, and lysine 104. The latter four residues are from the amino-terminal and carboxyl-terminal alpha-helices, and cluster where the two helices cross each other on the back surface of the molecule. Antibodies against native pigeon cytochrome c reacted very poorly with the several cyanogen bromide-cleaved fragments of the molecule, consisting of residues 1 to 65, 1 to 80, 66 to 104, and 81 to 104.