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Genome-wide Association Studies-GWAS01:11

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Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
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Array-CGH Analysis Suggests Genetic Heterogeneity in Rhombencephalosynapsis.

F Démurger1, L Pasquier, C Dubourg

  • 1Service de Génétique Clinique, CHU Hôpital Sud, Rouen, France ; Equipe Génétique des Pathologies Liées au Développement, UMR 6290 CNRS, IFR 140 GFAS, Université de Rennes 1, Faculté de Médecine, and Laboratoires de, Rouen, France.

Molecular Syndromology
|October 30, 2013
PubMed
Summary
This summary is machine-generated.

Rhombencephalosynapsis, a rare cerebellar malformation, may have diverse genetic origins. This study identified several chromosomal rearrangements in affected patients, suggesting multiple genetic causes for this condition.

Keywords:
Array-CGHCopy Number VariationNDE1Rhombencephalosynapsis

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Area of Science:

  • Neuroscience
  • Genetics
  • Developmental Biology

Background:

  • Rhombencephalosynapsis is an uncommon cerebellar malformation characterized by vermian agenesis and fused hemispheres.
  • The underlying embryologic and genetic mechanisms remain largely unknown.
  • Currently, no animal models exist to study this condition.

Purpose of the Study:

  • To investigate the genetic causes of rhombencephalosynapsis.
  • To identify candidate genes associated with this cerebellar malformation using microarray analysis.

Main Methods:

  • Agilent oligonucleotide arrays were employed to screen a cohort of 57 patients with rhombencephalosynapsis.
  • Detected chromosomal rearrangements were further analyzed using sequencing and in situ hybridization.

Main Results:

  • Four distinct unbalanced rearrangements were identified: a 16p11.2 deletion, a 14q12q21.2 deletion, an unbalanced translocation t(2p;10q), and a 16p13.11 microdeletion.
  • The 16p13.11 microdeletion encompassed two candidate genes that were further investigated.

Conclusions:

  • This microarray screening represents the first genetic analysis of a rhombencephalosynapsis patient cohort.
  • The findings suggest that rhombencephalosynapsis likely results from heterogeneous genetic causes.