Related Experiment Video
Updated: May 6, 2026

A Workflow for the Quantitative Assessment of the Endophytic and Epiphytic Bacterial Microbiomes of the Bark of Populus trichocarpa
Published on: June 27, 2025
Effect of sampling scale on the assessment of epiphytic bacterial populations
L L Kinkel1, M Wilson, S E Lindow
1Department of Plant Pathology, University of Minnesota, 495 Borlaug Hall, 55108, St. Paul, Minnesota, USA.
Abstract:
Bacterial populations on above-ground plant surfaces were estimated at three different biological scales, including leaflet disks, entire leaflets, and whole plants. The influence of sample scale on the estimation of mean bacterial population size per unit and per gram and on the variability among sampling units was quantified at each scale. Populations were highly variable among sampling units at every scale examined, suggesting that there is no optimal scale at which sample variance is reduced. The distribution of population sizes among sample units was sometimes, but not consistently, described by the lognormal. Regardless of the sampling scale, expression of population sizes on a per gram basis may not reduce variance, because population size was not generally a function of sample unit weight within any single sampling scale. In addition, the data show that scaling populations on a per gram basis does not provide a useful means of comparing population estimates from samples taken at different scales. The implications of these results for designing sampling strategies to address specific issues in microbial ecology are discussed.
More Related Videos
08:56Automatic Image Processing to Determine the Community Size Structure of Riverine Macroinvertebrates
Published on: January 13, 2023
09:45A New Method for Qualitative Multi-scale Analysis of Bacterial Biofilms on Filamentous Fungal Colonies Using Confocal and Electron Microscopy
Published on: January 25, 2017
Related Concept Videos
Methods to Assess Microbial Populations
Microbial Growth Measurement: Indirect Methods
Microbial Growth Measurement: Direct Methods
Sampling Plans
Random sampling is a method where each member of the population has an equal chance of being selected for the sample. It involves selecting individuals randomly, often using random number generators or lottery-type methods. For example, when analyzing the properties of a...
Methods to Assess Microbial Communities