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Updated: May 6, 2026

Estimating Sediment Denitrification Rates Using Cores and N2O Microsensors
Published on: December 6, 2018
Estimation of nitrification rates in flooded soils
D L Chen1, P M Chalk, J R Freney
1Division of Plant Industry, CSIRO, G.P.O. Box 1600, 2601, Canberra, A.C.T., Australia.
Estimating nitrification rates in flooded soils is challenging. While isotope dilution and ammonium oxidation inhibition show promise, careful selection of methods is crucial to avoid underestimation due to labeled ammonium sources.
Area of Science:
- Soil Science
- Environmental Microbiology
- Biogeochemistry
Background:
- Nitrification is a key process in soil nitrogen cycling.
- Accurate measurement of nitrification rates is essential for understanding soil health and nutrient management.
- Flooded soils present unique challenges for nitrification rate estimation.
Purpose of the Study:
- To evaluate the effectiveness of three techniques for estimating nitrification rates in flooded soils.
- To compare methods based on ammonium oxidation inhibition, nitrite oxidation inhibition, and nitrogen-15 (¹⁵N) isotope dilution.
- To identify potential sources of error and limitations in each technique.
Main Methods:
- Short-term soil incubation experiments were conducted.
- Ammonium oxidation was inhibited using various chemical compounds, including emulsified 2-ethynylpyridine.
- Nitrite oxidation inhibition was attempted with compounds like potassium chlorate.
- Nitrogen-15 (¹⁵N) isotope dilution techniques were employed.
Main Results:
- Emulsified 2-ethynylpyridine effectively inhibited ammonium oxidation without significantly impacting nitrogen mineralization or immobilization.
- Inhibitors of nitrite oxidation proved largely ineffective or non-specific, compromising this approach.
- Isotope dilution methods yielded similar nitrification rate estimates to each other.
- Nitrification rates estimated by isotope dilution were lower than those from ammonium oxidation inhibition in two out of three soils.
- Underestimation by isotope dilution occurred when labeled ammonium originated from dissimilatory nitrate reduction.
Conclusions:
- Emulsified 2-ethynylpyridine is a suitable inhibitor for estimating gross nitrification rates in flooded soils.
- Nitrite oxidation inhibition is not a reliable method for nitrification rate estimation in these conditions.
- Nitrogen-15 (¹⁵N) isotope dilution can underestimate nitrification rates in soils with significant dissimilatory nitrate reduction.
- Careful consideration of potential artifacts is necessary when selecting methods for nitrification rate determination.
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